KEGG   Pangasianodon hypophthalmus (striped catfish): 113524504
Entry
113524504         CDS       T05759                                 
Name
(RefSeq) WD40 repeat-containing protein SMU1-like isoform X1
  KO
K13111  WD40 repeat-containing protein SMU1
Organism
phyp  Pangasianodon hypophthalmus (striped catfish)
Brite
KEGG Orthology (KO) [BR:phyp00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:phyp03041]
    113524504
Spliceosome [BR:phyp03041]
 Complex B
  Other components
   Complex B specific factors
    113524504
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40 Beta-prop_WDR3_1st Beta-prop_THOC3 WD40_WDHD1_1st WD40_Prp19 WD40_CDC20-Fz Beta-prop_WDR36-Utp21_2nd Beta-prop_EML_2 Beta-prop_TEP1_2nd WDR55 EIF3I Beta-prop_WDR3_2nd WD40_Gbeta Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd Beta-prop_WDR36-Utp21_1st ANAPC4_WD40 Beta-prop_EML Beta-prop_WDR75_1st LisH_TPL Beta-prop_ACSF4 NBCH_WD40 Beta-prop_WDR90_POC16_2nd WDR90_beta-prop_4th Beta-prop_RIG_2nd Beta-prop_SPT8 Beta-prop_VPS8 WD40_MABP1-WDR62_1st Beta-prop_DCAF4 Beta-prop_NWD2_C Beta-prop_Nup120_160 Beta-prop_TEP1_C Beta-prop_WDR41 Beta-prop_Vps41 Beta-prop_HPS5 Beta-prop_Aladin Beta-prop_SCAP Ge1_WD40 Beta-prop_IFT140_1st WD40_RFWD3 Beta-prop_NOL10_N Beta-prop_DCAF12 Beta-prop_EIPR1 Beta-prop_IP5PC_F Beta-prop_NUP159_NUP214 Beta-prop_IFT122_1st Beta-prop_LRRK2 Beta-prop_WDR19_1st Beta-prop_WDR75_2nd WD_LRWD1 VPS8_N LisH_WDR26 Beta-prop_WDR35_TULP_N LisH_PAC1 LisH DGF-1_beta-sheet
Other DBs
NCBI-GeneID: 113524504
NCBI-ProteinID: XP_026766584
LinkDB
Position
Unknown
AA seq 539 aa
MELEVESADVIRLIMQYLKENNLPRTLATLQEESTVALHTVDSIESFMEDVNGGRWDAVL
RAIQHLKLPDQLLIDLYEQVVLELIELKELGAAGCLLTQTDPMIMLKHTQPERYAKLEAL
LTNKHFDPNEIYPEGSSKEKRRLAIAQALVTEVSVVPPSRLMALLGQGRLCESALYRLQE
TKALRQFGSLAMLSLKWQQHQGLLPPGMSIDLFRGKTMMKDLEEERFPTQLSHLLKFGPK
SHVECARFSPDGQYLITGSVDGFIEVWDFTTGKICKDLKYQAQDNFMMMNEAVLCLAVSH
DSEMVVSGAQDGKIQLWRIRNGQCLRKFERPHSKAVTCLCFSRDNGQLLSGSFDHIIRLH
GLKSGKMLKEFQGHTSCINDVIFSHNGQFAISASADGTVKIWNVNTAECTITIKTPDVPE
GSDITVNNVVLVPKNPEHFVVCNRTSTVVVMNVQGQVLRSFSSGVREGGDFVCCTLSPRG
EWIYCVGEDYVLYSFSTITGKLERTLTVHEKDVIGITHHPHQNLIATYSEDGLLKLWKP
NT seq 1620 nt   +upstreamnt  +downstreamnt
atggagctggaggtggaatccgccgatgtgatccggctgatcatgcagtacctgaaggag
aacaatctgccgcgcactctggccacgctgcaggaggagagcacggtggctctgcacaca
gtcgacagcatcgagagcttcatggaggacgtgaacggcggccggtgggacgcggtgctg
cgagccatccaacacctcaaactacctgaccagctgctcatcgacctgtacgaacaggtg
gtactggagctgatcgagttgaaagaacttggagccgctggttgtttattgactcagacg
gaccccatgatcatgctgaaacacactcagcctgaacgatacgccaagctggaagctctg
ctcacaaacaagcactttgacccgaatgagatttacccagaaggcagcagcaaggagaag
cgcaggttggctatagctcaggcgctggttacagaggtcagcgtggttcctccctctcgc
ctcatggccctcctcggacagggtcgtttatgcgagagcgctctgtacaggttacaggag
accaaagcgctgaggcagttcggatcattagccatgttgtctctgaagtggcagcagcac
cagggtctcctgccccccgggatgtccatagacctgttccggggcaaaaccatgatgaag
gacctggaggaagagcgctttcccacccagctcagccaccttctaaagtttgggccgaag
tcgcatgtagaatgtgctcggttcagtccggatggtcagtatctgattacaggatcagtg
gatggatttatcgaggtttgggatttcaccacggggaaaatctgcaaggatttaaagtac
caggctcaggataacttcatgatgatgaatgaggcggtgctctgcctggcggtgagtcac
gacagtgagatggtggtgtccggagctcaggacggaaaaatacagctgtggaggattcgt
aacggtcagtgtctgcgtaaattcgagcgcccccacagcaaggccgtcacctgcctctgc
ttcagcagggacaacgggcagctcctcagcggctccttcgaccacatcatcagacttcat
ggactgaaatcaggaaagatgctgaaggagttccaaggtcatacttcctgcataaatgat
gtcatcttctcacacaacggccagtttgccattagtgcctcagcagatggcacagtgaag
atctggaacgtgaacacggcagaatgcaccatcaccatcaaaactcctgatgttccagaa
ggttctgacatcacggttaacaatgttgttctggtccccaagaacccggagcactttgtg
gtgtgtaacagaaccagcacagtggtcgtcatgaacgtccagggccaggtactgaggagt
tttagctcaggagtgagagagggaggagacttcgtgtgttgcacgttgtctcctcgcgga
gagtggatctactgcgtgggagaggactacgtgctttactcgttcagcaccatcactgga
aagctggagagaactctgacggtgcacgagaaagacgtgattggcataacccaccaccct
catcagaacctgatcgccacctacagcgaggacgggctgctgaagctctggaaaccgtga

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