Pangasianodon hypophthalmus (striped catfish): 113524524
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Entry
113524524 CDS
T05759
Name
(RefSeq) protein PAT1 homolog 1-like
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113524524
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phyp03019
]
113524524
Messenger RNA biogenesis [BR:
phyp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
113524524
mRNA degradation factors
5'-3' decay
Decapping complex
113524524
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
113524524
NCBI-ProteinID:
XP_026766613
LinkDB
All DBs
Position
Unknown
AA seq
530 aa
AA seq
DB search
MFRFQSFDDDCTLEEEEEGLVEEEDEIDQFNDDTFGAGAIGKFYSMNSHSIWENNMGFGP
VSVTHGLVTHMEDSPLLSMMKELPKRTPPISREEGRDLSERVPPPRASSPVIGSPPVRAI
PIGTPPKQPMSHALNQQIHHPTAVHVRAPVPHRYPPPFPERLSPNTLLNIANSPLCRPPF
PAGVAPVLSQIQRAQLLNSQVGPFPRGPGPAPPMLPGAAGGFRPYFGQPPPRVGPHGPHG
PHPNHAPPSSHAPIRHNTTHLHPQHRRMLTQRMQSRGGGARGGGGDRRIRDPYSNLMTQK
EKDWVARIQMMQLQSTDPYLDDYYYQNYYEKMEKRQERDRDSSRKEHTTKLITPQVAKIE
HTYRPVQFAGSLGKLTVSSVNNPRKMIDAVVTSRSDDEEKREKQVWNKRRQILYTVEKMY
SLLLEVQDFEKKFLQTPEEEREALLEQHKTNTLQLYNSLREKEWDDRVSDEQCLMIMSVR
KGKRLIARLLPFLSSSQAAAVVMGIARNLPALAKKDKQDQCALENFSWIL
NT seq
1593 nt
NT seq
+upstream
nt +downstream
nt
atgttccgttttcagtcctttgatgatgactgcaccctggaggaggaggaggagggtctg
gtagaggaagaagatgaaattgaccagtttaatgatgacacgtttggtgctggagcaatc
ggtaaattttacagtatgaactcgcacagtatttgggagaacaacatgggcttcggtcct
gttagtgtcacacatggactcgtcacacacatggaggactctccattattgtccatgatg
aaagagcttccaaaacggactcctccaatcagcagggaggaggggcgggacttgtccgaa
agggtcccgccccctcgggcctcctcgcctgtaattggaagtccacctgtaagagcgata
cccatcggaacaccacccaaacagcccatgagccacgccctgaatcagcagatccaccat
cccactgcggtgcatgtgagagctccagttcctcatcgttaccctcctcccttccccgag
cgcctctcacccaacaccctgctgaacatcgccaactctcctctgtgtcgtcctccgttc
cccgctggagtcgctccggtcctgtctcagatacagcgagcccaactgctcaactctcag
gtgggtccgttcccccgcggtcctggtcctgctcctcccatgctgcctggtgctgctgga
ggctttaggccttactttgggcagccgcctcctagagtcggtcctcacggccctcacggc
cctcatcctaaccatgcccctccatctagccacgcccccatccgccacaacaccacccac
ctccacccccagcaccgcaggatgctcacgcagaggatgcagagcagaggtggtggagcg
agaggaggaggaggggacaggaggatcagggacccctacagtaatctgatgactcagaag
gagaaggactgggtggcccgcattcagatgatgcagctgcagagcactgatccttacctg
gacgactactactaccagaattattatgaaaagatggagaagcgtcaggagcgggaccga
gacagcagcaggaaggagcataccaccaaactcatcactcctcaggtggccaagatcgag
cacacctatcgcccagtgcagtttgccggttctctgggtaaactcaccgtgtccagtgtg
aacaatccgaggaagatgatcgatgccgtggtgacgagtcgctctgatgatgaggagaag
agagagaagcaggtgtggaataagcggcggcagatcctctacactgtggagaagatgtac
agtctgctgctggaggtgcaggactttgagaagaaatttctccaaaccccggaggaggag
agagaagctctgctggagcagcacaaaaccaacacactgcagctctacaactcgctgcga
gagaaagagtgggacgacagagtgagtgatgagcagtgtctgatgatcatgtcggtgcgt
aaagggaaacgcctcatcgctaggctcctccctttcctttcttcgtcccaagctgctgcc
gtcgtcatgggaatcgcccgcaatctccccgctctggccaagaaggacaaacaggatcag
tgtgccctggagaacttctcctggattttatag
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integrated database retrieval system
