Pangasianodon hypophthalmus (striped catfish): 113524563
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Entry
113524563 CDS
T05759
Name
(RefSeq) transcription factor Sox-1a-like
KO
K09267
transcription factor SOX1/3/14/21 (SOX group B)
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
phyp03000
]
113524563
Transcription factors [BR:
phyp03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
113524563
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SOXp
HMG_box
HMG_box_2
HMG_WDHD1
ZrgA
Rhv_5
Motif
Other DBs
NCBI-GeneID:
113524563
NCBI-ProteinID:
XP_026766669
LinkDB
All DBs
Position
Unknown
AA seq
285 aa
AA seq
DB search
MYSMMMETDLHSPGPQSNTNPGQTGPNTGNKANQERVKRPMNAFMVWSRGQRRKMAQENP
KMHNSEISKRLGAEWKVMSEAEKRPFIDEAKRLRAMHMKEHPDYKYRPRRKTKTLLKKDK
YSLAGGLLGGAATGAGVGLGVGMSAAGVGQRLESPGGHGGSAGAGYSHMNGWANGAYSGQ
VAAAAAAAAMMQEAQLAYGQHPGSGAHHHHHHPHAHHHHPHNPQPMHRYDMSTLQYSPIS
SSQSYMSASPPGYGGISYSQHQNAGVASSAAIGTLSSLVKSEPNG
NT seq
858 nt
NT seq
+upstream
nt +downstream
nt
atgtatagcatgatgatggagacggacttgcactccccgggaccccagagcaatacaaac
ccggggcagacaggtccgaacacggggaacaaagccaaccaagagcgcgtcaaacgccct
atgaatgcgtttatggtgtggtcccgcggccagcgccggaaaatggctcaggaaaatccg
aaaatgcacaactcagagatcagcaagagactcggcgcagagtggaaggtgatgtcagaa
gctgaaaagcggcccttcatcgacgaggcaaaaaggctgcgcgccatgcacatgaaagag
catccggattacaaataccgaccgaggcgcaaaaccaagacgctgcttaaaaaggacaag
tactctctggctggcggtctgctcggcggagcggccacgggcgcgggagttggcctcggg
gtgggcatgagcgcagccggagtaggccagaggttagaaagccccgggggtcacggtggc
tcagccggcgccggttactcgcacatgaacggctgggcaaacggcgcgtattcgggccaa
gtcgctgccgccgccgctgctgctgctatgatgcaggaggcgcagctcgcctacgggcag
cacccgggcagcggggcacaccaccaccaccaccacccccatgcccaccaccatcatccg
cacaacccgcagccaatgcaccgctacgacatgagcaccctgcagtacagccccatatcc
agttcccagagttacatgagcgcgtcgccgcccggctatggagggatttcctattcccag
caccaaaacgcgggtgttgcgtcgtcggccgccatcggcacgctgagctctttggtcaag
tccgagccgaacgggtga
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