Pangasianodon hypophthalmus (striped catfish): 113524808
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Entry
113524808 CDS
T05759
Symbol
smarcc1
Name
(RefSeq) SWI/SNF complex subunit SMARCC1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
113524808 (smarcc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
phyp03021
]
113524808 (smarcc1)
03036 Chromosome and associated proteins [BR:
phyp03036
]
113524808 (smarcc1)
Transcription machinery [BR:
phyp03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
113524808 (smarcc1)
Chromosome and associated proteins [BR:
phyp03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
113524808 (smarcc1)
PBAF complex
113524808 (smarcc1)
GBAF(ncBAF) complex
113524808 (smarcc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM
SWIRM-assoc_1
Myb_DNA-binding
Myb_DNA-bind_6
BRCT
HEAT_GCN1
BRCT_2
Motif
Other DBs
NCBI-GeneID:
113524808
NCBI-ProteinID:
XP_026766964
LinkDB
All DBs
Position
Unknown
AA seq
950 aa
AA seq
DB search
MATAGTAATAAGGSGSGGSAAGQAGPGALVGRKKDGGPSAKFWESAETVSQLETVRLWIG
KHYKKYVQADSPSCKSLAGLVVQLLQFQEDAFGRRVSNPALTKLPAKSFLDFKAGGALCH
ILGSAYKFKSEQGWRRFDLQNPSRMDRNVEMFMNIEKTLAQNNCLTRPNVYIASDVDQKQ
AGKLKDIIKRHQGSITDDKSKATHHICPSPAQTEEDNWRKKKKKKKRSLLFWVYCVCSYD
TWVSTSDVDGEVEDPPSSEKPWRVHAKWVLDTDAFNEWMNEEDYEVDENRKPVNFRQRIF
PKEEESSRTPDRKERKSLAGGKKRRRSPSPPSTPAESRKKGSKKGNAGPHWKRRGHRDDD
EQDEDLTKDMEDPSPVPGMEEVSLPKNVNQKKDSENVPVKGGTMADLDEQEDGSVGSGGK
DDDEQGKMEVNRLMDSSEDNVTEQTHHIIIPSYSAWFDYNSIHEIERRALPEFFNGKNKS
KSPEIYLAYRNFMIDTYRLNPQEYLTSTSCRRNLTGDVCAVMRVHAFLEQWGLINYQVDA
ESRPMPMGPPPTPHFNVLADTPSGLVPLHHRPPQVPSAQQMLSFPEKSKEKPTDLQNFGL
RTDMYSKKNPKSKGGSGTREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFL
RLPIEDPYLESSEASLGPLAYQPVPFSQSGNPVMSTVAFLASVVDPRVAAAAAKAALEEF
SRVREEVPAELVEAHVKKVQEAARSTGKVDPSYGLESSGIAGTAPDEPEKTETTESEKME
TDSESQQGEKTESKDETEKASEAAEKPAEGEKVKSEAAEKPEGEEEEGDGGETNEASAAD
EKEKEEAMEVTEGGKEGEETTTEEGKKKLELDIGEGNIATAAAAALASAATKAKHLAAVE
ERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREKEAVRLKHHLHSLL
NT seq
2853 nt
NT seq
+upstream
nt +downstream
nt
atggcgactgcgggaactgcggcgactgcggcgggcggctcgggctcgggaggatcagca
gccggtcaggcgggacccggtgctttggtgggcagaaaaaaggacggaggaccgtcggct
aaattttgggagagcgctgagacggtttctcaactcgagacggttcggctgtggatcgga
aaacactacaaaaagtatgtccaggccgactctccgtcctgtaaatcgttagcaggactg
gtggttcagcttctccagttccaggaggacgcgttcggacgcagagtgagcaacccggcc
ctcaccaaactgcccgcaaaaagcttcttggacttcaaagctggaggagctctgtgtcac
atcctgggatctgcttacaagtttaaaagtgaacagggatggcgacggttcgatctgcag
aatccatcccggatggacagaaacgttgagatgttcatgaatattgagaaaactctcgca
cagaataactgtctgactcgaccaaacgtgtacatcgcatccgacgtggaccaaaaacag
gccgggaaactgaaagacatcatcaagagacatcagggctccatcactgacgacaaatcc
aaagccacacatcacatctgtccatctccagctcagacggaggaagacaattggagaaaa
aaaaaaaaaaagaagaagaggagtttgctgttttgggtttattgtgtgtgcagttacgat
acctgggtttccaccagcgacgtggacggtgaagtcgaggatcctccgagctcagagaaa
ccctggagggtgcacgccaagtgggtcctggatacggacgcgtttaacgagtggatgaac
gaggaagattatgaagtagatgagaacaggaagccggtgaacttccgccagcgcatcttc
cctaaagaggaggagtcttcccgtacacctgatcgtaaggagcgaaagtctctggccgga
gggaagaagaggcggcgctccccgtcccccccgagcacccccgcggagtcccgcaagaag
ggcagcaagaaagggaacgccgggccgcactggaagcgccgaggtcatcgtgatgatgat
gagcaggatgaagatctcaccaaggacatggaggatccgtctcctgttccgggaatggag
gaggtttctctgcccaaaaatgtgaatcagaagaaggacagcgagaacgtgccggttaaa
ggaggaaccatggctgatctggatgaacaggaagacggctctgtgggctctggggggaag
gacgatgatgaacagggcaaaatggaggtaaaccgtctcatggactccagcgaggataac
gtgaccgagcaaacacatcacatcatcattcccagctactccgcctggttcgactacaac
tcgattcatgaaatagagagacgagccttacccgagttcttcaatggaaaaaacaaatct
aaatccccggagatatatctagcgtatcgtaacttcatgatcgatacgtatcggctgaac
cctcaggaatacctcacctccacttcctgcagacgcaacctcactggagacgtgtgtgct
gtcatgagggtgcacgcgtttctggagcagtggggtctcattaactatcaggtggatgca
gagagcaggccgatgccgatgggtcctccacccacaccacactttaacgtcctggctgat
acgccatcaggcctcgtcccgctgcaccatcgccccccgcaggttccctcagctcagcag
atgctcagcttcccggagaaaagcaaagaaaaacccacagacctgcagaactttggcctc
aggacagatatgtactccaagaagaaccctaagagtaaaggaggtagcggaacacgagaa
tggaccgagcaggaaactctgctgctattagaggctctggagatgtacaaggatgactgg
aacaaggtttcggagcatgttggcagccggacgcaggacgagtgtatccttcacttcctg
cggctgcccatcgaggacccgtacctggagagttcggaggcgtctctcggacccctcgcc
tatcagcccgtccccttcagccaatcgggaaaccccgtcatgagcaccgtggccttcctc
gcatccgtggtggatcccagagtggctgcagctgccgctaaggctgctctcgaggagttc
tctcgtgtgagggaggaggttccagccgagctggttgaggctcatgtgaagaaagttcag
gaggcagcgaggagcacggggaaagtcgacccgtcctacggcctggagagcagcggcatc
gcgggaacggcgccggacgagccggagaaaaccgaaaccacagaatcagagaagatggaa
acagattccgagtctcagcagggagagaagacggagtctaaggatgagacggagaaagcg
agtgaggcagcagagaaaccagcggagggagagaaagtgaaaagtgaagcggcggagaaa
cccgagggtgaggaagaggagggtgacggaggagagacgaatgaagcgagtgctgctgat
gagaaagagaaggaggaggcgatggaggtgacggagggaggaaaggagggagaagagacg
acgacggaggagggcaagaagaagctggagcttgatatcggagagggaaacatcgccacc
gctgcggctgccgcactcgcctccgctgccaccaaggctaagcacttggcagcggtggag
gagaggaagatcaagtctctggtggcgctgctggtggagacgcagatgaagaagttggag
attaaactacgtcacttcgaggagctggagaccatcatggaccgagagaaagaggctgtg
aggctcaaacatcatctccactcactattataa
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integrated database retrieval system
