KEGG   Pangasianodon hypophthalmus (striped catfish): 113525005
Entry
113525005         CDS       T05759                                 
Symbol
thoc6
Name
(RefSeq) THO complex subunit 6 homolog
  KO
K13175  THO complex subunit 6
Organism
phyp  Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp03013  Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:phyp00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    113525005 (thoc6)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:phyp03019]
    113525005 (thoc6)
   03041 Spliceosome [BR:phyp03041]
    113525005 (thoc6)
Messenger RNA biogenesis [BR:phyp03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     113525005 (thoc6)
Spliceosome [BR:phyp03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    113525005 (thoc6)
SSDB
Motif
Pfam: WD40_WDHD1_1st WD40_Prp19 WD40 WD40_CDC20-Fz WDR55 ANAPC4_WD40 Beta-prop_EML_2 Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 EIF3I NBCH_WD40 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd WDR54 Beta-prop_RIG_2nd WD40_like Beta-prop_WDR75_1st Beta-prop_EML Beta-prop_SCAP Beta-prop_IFT140_1st Peptidase_C8 Beta-prop_EIPR1 Beta-prop_IP5PC_F Beta-prop_TEP1_C Beta-prop_IFT122_1st Beta-prop_NOL10_N Beta-prop_SPT8
Other DBs
NCBI-GeneID: 113525005
NCBI-ProteinID: XP_026767221
LinkDB
Position
Unknown
AA seq 299 aa
MGPIELLHMSVFSQSFSPCGRFLAAGNNYGEIAVFREYREYRVLRVLRVPRVQSTESTES
TESTESTESTEYREYRVLRHWIYLHGSLSYLNYFFGFLDLNLVFFSFFFSQNTKAVWTKR
PDYKTSLEIPEINTMIINTRDNSLVVGGGDNNIHIMDMETGTFKSVLQGHTDYIHCLSLR
EREGEILSGAEDGAVRMWDWRTGRSVHCVEVYKYEECARPQYGKWISCVATDSDWMLCGG
GPALSLWHLRSMSPTSIFSLSGCQREAVFHQDLVMTVAGSSNQIDVFTNFSYRAFSLSF
NT seq 900 nt   +upstreamnt  +downstreamnt
atgggtccgattgagctcctgcacatgtccgtgttctcgcagagtttctctccatgtggt
cgctttttagcagctgggaataactacggagagatcgcagtgttcagagagtacagagag
tacagagtactgagagtactgagagtaccgagagtacagagtactgagagtaccgagagt
actgagagtaccgagagtaccgagagtaccgagtaccgagagtacagagtactgagacac
tggatttatttgcatggttcattaagttatttaaattatttttttggatttcttgactta
aatcttgtttttttttctttttttttttcacagaacactaaagctgtttggacgaagaga
cccgattacaagaccagtctcgaaatcccagagatcaacacaatgatcatcaacaccaga
gataacagcttggtggtcggtgggggagacaacaacatccacatcatggacatggaaact
ggaaccttcaagtcggttctgcagggtcacacagattatattcactgtttatctctgaga
gagagggagggagagatcctgtcaggagcggaggacggagccgtgagaatgtgggactgg
aggacgggccgcagtgtgcactgtgtggaggtttataaatatgaggaatgcgctcgcccc
cagtacgggaagtggatcagctgcgtggcgacggattctgattggatgctgtgtggtgga
ggccccgccctctctctgtggcatctccgctccatgtctcccacctccatcttctcgctg
agcggctgtcagagggaagccgtgttccatcaggacctggtgatgactgtcgcaggaagc
agcaaccagatcgacgtcttcaccaacttctcctacagagccttctcactgtccttctga

DBGET integrated database retrieval system