Pangasianodon hypophthalmus (striped catfish): 113525229
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Entry
113525229 CDS
T05759
Name
(RefSeq) collagen alpha-1(X) chain-like
KO
K19479
collagen type X alpha
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C1q
BclA_C
Motif
Other DBs
NCBI-GeneID:
113525229
NCBI-ProteinID:
XP_026767504
LinkDB
All DBs
Position
Unknown
AA seq
654 aa
AA seq
DB search
MELHTVCVLLLLAVCVGATPDRYYVQKQQSYPVKAQELSGAPGIPGEPGLPGPPGPPGPP
GMSVMGQPGPRGPPGPPGPSGYSSPGKPGSPGSPGKPGENGMPGERGHPGPGGPQGARGS
PGAPGSPGPAGFSAPGKPGPHGLPGAMGPKGEPGAKGLPGIPGLPGHKGEPGHGVQGRPG
APGQMGPMGPSGQPGQPGIGKPGATGYPGEPGKSGMPGRDGTPGPMGAQGPKGTPGAPGI
GAPGKPGQNGAPGLPGPMGHKGYQGPAGQPGAPGLPGVGKSGAPGIPGNTGAPGTPGTPG
QKGEQGPIGFSGQPGAVGPVGPSGPQGNRGFPGERGPHGPKGDAGIIGAPGAKGQKGDQG
LQGFTGKPGIPGASGPQGPPGATGYQGPKGERGYTGPTGSPGPIGPTGLKGHTGPQGMPG
SRGENGLPGARGPMGPPGSAGPSGATGIPGPPGPPGPAGLVTKGLSGSQGPPGFPGARGQ
DGRPGSPGPPGPPGPPGEIVYYNEKSMPIKSEVFPVRQELIKPSMSAFTALLTRAYPSAG
TPIVFNQIVYNGENHYNPSTGVFTCQVPGFYYFVFHMHVNGANALVALYKNNEPVVFSYD
EYNKGFLDQMSGSTVLMLHMGDTVYIQVPDDQSNGIYADDNVHCSFTGFLIAST
NT seq
1965 nt
NT seq
+upstream
nt +downstream
nt
atggagctgcacacggtgtgtgttctcctcctgctggcggtgtgtgtgggagctacacct
gatcgctactacgtccaaaaacagcagtcatatcctgtcaaggcccaggaactttcaggt
gctccaggtatcccaggggaacctggcctcccgggtccccctggtccccctggtccccca
ggaatgagtgtgatgggtcaaccgggaccaaggggacctcctggaccacctggaccatca
ggatattcttcacctggaaagcctggaagtccaggttcaccgggaaaaccaggtgaaaat
ggaatgcctggagaaagaggacatcctggacctggaggaccccaaggagcaagaggatct
ccgggagcccccggcagccctggtcctgctggtttctccgctcctggaaagccaggacct
cacggtctacctggggcaatggggcctaaaggagaacctggtgcaaaaggacttccaggt
attcctggcctacctggacacaaaggtgaaccaggtcatggtgtgcaaggacgtcctggt
gcacctggccaaatgggtccgatgggtccttcaggtcagcctggtcaacctggaattgga
aaacctggtgcaactggataccctggggaacccggaaagtcaggtatgccaggtagagat
gggactccaggtcccatgggtgcacaaggcccaaagggaaccccaggcgctccgggtata
ggtgcaccaggtaaaccaggtcagaacggtgctccaggattgcctggcccaatgggacat
aaaggttatcagggaccagctggacaacctggagctcctggtcttccaggtgttggcaaa
tctggagcacctgggattccaggaaacacaggtgcacctggcacgccaggtacgccagga
cagaagggagagcaaggtccaataggtttttcaggtcagccaggtgctgttgggcctgtg
ggtccatcaggtccacagggtaataggggatttccaggtgagagaggtccacatggacct
aaaggtgatgctggtattattggggcacctggtgcaaaaggtcaaaagggagatcaggga
ctacagggctttacaggtaaaccaggtattccaggggcatcaggtccgcaaggtcctcct
ggtgctacaggatatcagggtcccaaaggtgagcgaggttatacagggccaacaggcagt
ccaggacctataggtccaacaggattgaaaggccatacaggtccacaaggcatgcctggt
agcaggggtgaaaatggccttcctggagcacggggaccgatgggcccaccaggatcagct
ggaccctcaggagccacaggtattcctggtccccctggaccccctggcccagcaggactt
gtaaccaaagggctttctggttcacagggtcctccaggtttccctggtgccagaggtcag
gatggtcgcccaggttcacctggacctcctggcccacctggtccaccaggtgagattgtt
tattataatgagaagagcatgccaatcaaatctgaggtgttccctgtcagacaggagctt
ataaagccatccatgtcagcctttacggctcttttgaccagggcttaccctagcgcagga
acaccaatcgtgttcaaccagatcgtgtacaatggagagaaccactataaccctagcacc
ggggtgtttacttgtcaggttccaggattttattactttgttttccacatgcatgtcaat
ggggccaacgccctggttgcactttataaaaacaatgagccagtcgtgttctcttatgat
gagtataataagggcttcctggatcagatgtcaggcagcactgtgctcatgctgcatatg
ggcgataccgtctatatccaggttccagatgaccagtccaatggcatctacgctgacgat
aacgttcactgttctttcactggtttcttgattgcctcaacgtga
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