Pangasianodon hypophthalmus (striped catfish): 113526155
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Entry
113526155 CDS
T05759
Symbol
prpf40a
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113526155 (prpf40a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
phyp03041
]
113526155 (prpf40a)
Spliceosome [BR:
phyp03041
]
Complex A
U1 snRNP components
U1 related factors
113526155 (prpf40a)
Complex B
113526155 (prpf40a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
DTW
Motif
Other DBs
NCBI-GeneID:
113526155
NCBI-ProteinID:
XP_026768772
LinkDB
All DBs
Position
Unknown
AA seq
879 aa
AA seq
DB search
MSSTDGNNAPSQAPPFPGVPPSAIPPPFMGPPGIPPHFPPMGMPPMGQRPPSMAPMPGGM
IPPPMMPPMGAPPMGQMPGMMPPMMPPMMPPRMPAATMQPTGPPGVSPVDTAATAAPGTT
STTANDSSPDDQPKKQKSVWTEHKSVDGKTYYYNTETKQSTWEKPDELKSPAEQMLSKCP
WKEYKSDTGKPYYYNSQTKESRWTKPKELEDLEAMIKAEENGTVDVVAPGTTPTLTAHTD
TALTVPAVPEADTTIATSVAEEQPSQMPVQGGEGGTEATVTSPKDTPTTETQASNDTSKE
ERPELVKKVYKWNTKEEAKQAFKELLKEKGVASNASWEQAMKMIINDPRYSALPKLSEKK
QAFNAYKVQTEKEEKEEARIKYKESKETFQRFLENHDKMTSTTRYKKAEQMFGDLEVWSC
VPERDRLEIYDDVLFYLAKKEKEQAKQLRKRNWEALKNILDNMANVTYRTTWSEAQQYLL
DNPTFAEDEELQNMDKEDALICFEEHIRALEKEEEEEKQKSLLRERRRQRKNRESFQKFL
DELHDHGQLHSMSAWMEMYPTISSDIRFASMLGQPGSTPLDLFKFYVEDLKARYHDEKRI
IKDILKDKGFLVEISTSFEDFGSVISSDKRATTLDAGNIKLAFNSLLEKAEAREREREKE
EARKMKRKEAAFKSMLKQATPSLEPDATWEGVRERFLKEPAFEDITLESERKRIFKDFMH
VLEHECQHHHSKTKKHSKKSKKHHRKRSRSRSGSESEDDEYHSKKKKRSTSKSPSEHTSS
GESERSYKKSKKHKKKGKKRRHKSASPESDGEKDRKGRDKDKDKENDKSRGKNRSESKQK
SPKRKAPKEEGGWDTSGSELSEGELEKRRRTLLEQLDAP
NT seq
2640 nt
NT seq
+upstream
nt +downstream
nt
atgtcctctactgatgggaataatgctccaagtcaagcaccaccttttcctggagtccct
ccatcagcaataccccctccttttatgggaccacctggaataccgcctcacttcccgcct
atgggaatgccaccgatgggtcagaggccccccagcatggcgcccatgcctggagggatg
attccaccacccatgatgcccccgatgggcgctcctccaatgggacagatgccaggcatg
atgccaccgatgatgccgccaatgatgccaccacgcatgccagcagcgacgatgcagccg
acaggaccgcctggtgttagtcctgtggatacagctgctactgctgcacctggaactact
agcacaacagcaaatgactcttccccagatgaccagcctaaaaagcagaaatcagtgtgg
acagagcataagtctgtggatggcaaaacctattactacaacacggagaccaagcagtcc
acctgggagaaaccggatgaactcaaatcacctgcagagcaaatgctctctaagtgccct
tggaaggagtacaagtctgacactggaaagccttattactacaactctcagactaaagag
tcgcgctggacaaagcctaaagaactcgaagatctagaagcaatgataaaggctgaggaa
aatgggacggtggatgtcgtagctcctggcactactcccactctcacagctcacacagat
acagcactcactgtgcctgctgttccagaggctgacactaccatagcaacaagcgttgcc
gaagaacagccatctcaaatgcctgtgcaggggggcgagggaggcactgaagcaacagtg
acatcacccaaggacacgcccacaacagagacacaggccagtaatgacacatctaaagaa
gaaaggccagagctggtgaagaaagtctacaagtggaacaccaaagaggaagcgaagcag
gctttcaaagaactgctcaaggagaagggtgttgcatcgaatgcgtcctgggagcaggcc
atgaagatgatcattaatgaccctcgttacagtgccctacccaagctgagtgagaagaag
caggcttttaatgcctataaggttcagacagagaaggaggagaaggaggaggccaggatc
aaatacaaagaatccaaagagacattccaacgcttcctggagaaccacgataaaatgact
tccaccaccagatacaagaaagcagagcagatgtttggtgatctggaagtgtggagctgt
gttccagagagagacagactggagatttatgatgatgttctcttctacttggctaagaaa
gagaaggaacaagccaagcaactgaggaagaggaactgggaggcactgaagaacatcttg
gataacatggctaatgtcacataccgcaccacctggtctgaggctcagcagtaccttctg
gataaccccacatttgctgaggacgaagagctacagaacatggataaggaggatgcgctg
atctgcttcgaggaacacatccgtgctctggagaaggaagaagaagaggagaaacagaaa
tctctgctgagagagagacgcagacagcgcaaaaacagggagtctttccagaaatttctg
gatgagttgcatgaccacggccagctgcactccatgtcagcatggatggagatgtatcca
accatcagttcagacatccgcttcgctagcatgctgggacaaccgggctctacacctctg
gacttgttcaagttctatgtggaagatctcaaggctcgttatcatgatgagaagagaatc
ataaaagacatcttaaaggataagggtttcttggtggagatcagcaccagctttgaggac
tttggctcagttatcagctctgacaagagggccaccactctggacgcaggcaacatcaaa
ctagccttcaacagtcttctggagaaggcagaggcacgagagcgggagagagaaaaggaa
gaggccagaaagatgaagaggaaagaggcagccttcaagagcatgctgaagcaggccacg
ccctcactggagcctgatgctacatgggaaggggtaagagagagattcctaaaggagcct
gctttcgaggacatcactctggagtcagagagaaagaggatattcaaagattttatgcat
gtactagagcacgagtgtcagcaccatcactccaaaacaaagaaacactcgaagaaatcc
aagaagcaccacaggaaacgatctcgttctcgatctggttctgaatctgaggatgatgag
tatcactcgaaaaagaagaaacgctcgacatcgaaatctccgtcagagcacacttcctca
ggggaatccgagagaagctataaaaaatccaaaaaacacaagaagaagggaaagaagaga
agacacaagtctgcttccccagagtctgatggagaaaaggacagaaaggggcgagacaaa
gacaaggataaagagaatgataagtccagagggaaaaaccgtagtgaatccaaacagaaa
tctcccaagaggaaagcacctaaagaagagggaggatgggacacatcaggcagtgaactg
agtgaaggagagctggagaagaggagaagaactcttctggagcagttagatgcaccttag
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