Pangasianodon hypophthalmus (striped catfish): 113526337
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Entry
113526337 CDS
T05759
Name
(RefSeq) U3 small nucleolar RNA-associated protein 15 homolog
KO
K14549
U3 small nucleolar RNA-associated protein 15
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
113526337
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
phyp03009
]
113526337
Ribosome biogenesis [BR:
phyp03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
113526337
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UTP15_C
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
WDR55
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_EML_2
Beta-prop_WDR90_POC16_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_SCAP
Beta-prop_IFT122_1st
WD40_MABP1-WDR62_1st
Beta-prop_EML
Beta-prop_RIG_2nd
Beta-prop_TEP1_C
WDR90_beta-prop_4th
NBCH_WD40
Beta-prop_SPT8
WD40_MABP1-WDR62_2nd
DUF4704
Motif
Other DBs
NCBI-GeneID:
113526337
NCBI-ProteinID:
XP_026769090
LinkDB
All DBs
Position
Unknown
AA seq
454 aa
AA seq
DB search
MASFKPTKILTYPKLGERVTEETLYWKNYKAPVQIKEFGAVTKIEFSPQPPHNYVVTAST
RIQVYGAHSQEPLRSYSRFRDTAYGGSFRGDGQLLVAGSEEGLIRLFDIGGRVALRQFTG
HTKAVHVTSFLSDGYRVLSGSDDLSCRVWDVASGAELSSYTEHSDYIRAATASKLNPDVF
ITGSYDHTLKVCDVRLGGSVMTLQHGHPVECVLLYPSEALLVSTGGRYVKVWDLLKGGQP
LVSLKNHHKTVTCACLMCLCTLNIINTWRRVNKPEVTVAVMIELNRRGTLRNALAGRDEQ
SLTTLLNFLLKNVTDSRFSNILLMVADVIVDLYQQVVPQSPVVERLLQRLMELLGREAEL
QQELLQVLGILDTLFASLAPRKEATAPRGPSAIQGGPPLAIQGGPPLAIQGGPLAIQGSP
PLAIQGGPLAIQGGPPLAIQGGPLAIQGGPLQAV
NT seq
1365 nt
NT seq
+upstream
nt +downstream
nt
atggcttcgtttaagcccactaaaatcctgacgtaccctaaactaggagagcgagtgact
gaggagacgctttactggaaaaactacaaggctccagtgcagataaaggaattcggcgct
gtcacaaaaatcgagttttcgcctcaaccacctcacaattacgtcgtgacggcgtccacc
agaatccaggtgtacggcgctcactctcaggagccgctgcgcagttacagtcgcttccgg
gacacggcgtatggcgggagtttccgtggcgacgggcagctgctggtggcgggaagtgaa
gaaggactcattcgtctgttcgacatcggaggtcgagtcgctctccgccagttcacagga
cacaccaaggcggtacacgtcacctcgttcctgtccgatggttatcgtgtgttatcgggt
tctgacgatttgtcgtgtcgggtttgggacgtggcaagtggagcagaactcagctcttac
accgaacacagcgattacatccgagctgcgactgccagcaaactcaaccccgacgtcttc
atcaccggttcctatgaccacacgctgaaggtgtgtgacgttcggttagggggaagcgtg
atgacgcttcagcacggacatcctgtcgagtgtgtgctgctctacccctctgaggcttta
ctggtgtccacaggaggtcggtatgtgaaagtgtgggatttgctgaaaggaggtcagccg
ctcgtctctctgaagaatcaccacaaaaccgtcacgtgtgcgtgtctgatgtgtttgtgt
actttgaatattataaacacgtggcggcgggtcaataaacctgaagtgacggtagcggtg
atgattgagctgaaccgcagaggaaccctgaggaacgctctggcagggcgagatgaacag
agtttaaccacactgctcaacttcctgctcaagaacgtaacagattcccggttctccaat
attctgctcatggtggcggacgtgatcgtcgatctgtatcagcaggtcgtccctcagtct
cctgtagttgagcgtctgctgcagcgtctgatggagcttctgggacgtgaagcagagctt
cagcaggagctgctgcaggttttgggaatcctcgacacgctcttcgcctctctggccccg
aggaaggaggcgacggcccccaggggcccatccgccattcagggcggcccaccactcgcc
attcagggcggcccaccactcgccattcagggcggcccactcgccattcagggcagccca
ccactcgccatacagggcggccccctcgccattcagggcggcccaccactcgccatacag
ggcggccccctcgccatacagggcggccccctgcaggctgtctga
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