Pangasianodon hypophthalmus (striped catfish): 113526488
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Entry
113526488 CDS
T05759
Name
(RefSeq) FRAS1-related extracellular matrix protein 1-like isoform X1
KO
K23380
FRAS1-related extracelluar matrix protein 1/2
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
113526488
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04091 Lectins [BR:
phyp04091
]
113526488
Lectins [BR:
phyp04091
]
C-Type lectins
Lecticans
113526488
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin_3
Frem_N
Calx-beta
Lectin_C
Motif
Other DBs
NCBI-GeneID:
113526488
NCBI-ProteinID:
XP_026769399
LinkDB
All DBs
Position
Unknown
AA seq
2154 aa
AA seq
DB search
MGVVDHVWTLVALSLILPLTQAESVLRLNNGLRVIRGQSVSVTTEELQFNSDGTSEACKV
EVVLNEPVTQRVGKLTPQVFDCHFHPDEVKYIHNGSPLLEEDTVMLRVYRFTHSETFTET
FFLKVQVLEAQRSLIEFGKVPLVVSEFYGLSNTIDSSVLTFRSEPDVICTVRLLTSEISV
PMLGQVIKEDLAQTDQASVQNPGLRKGRQTAISCPGNKACVHNTREVRFLKASCSEFLTS
GLKYQHLSPPSPEIDYVPLRVEIRDQNTRALLKTESVWLPVLIHGAMQNQPPHAAFMSMF
ILEVDQFILTPMTTAVLDAKDNETPQAQLVFNVTKPPAEGYITHLDDHTKAVFSFSWQDL
NDIKIAYQPPNSSHTSRKNIEVDFQAIDGFFTTSPPIMVHISIRTAETNAPRVSWNLGLD
LLEGQSRPITWENLQIVDNDNIDAVTLIAVDGPLHGRLSVRGGKGFMFKVKDLREGMVVY
HHSDSDTTRDYIVFRITDGRHSIRHKFPINILPKDDTPPFLINNVAFEVQEGGSVLVEEY
MLMASDLDSSDDYIHYQLVTFPSAGNIVRKSSAREPGVPVKTFMQRDILQGLIYYKHTGE
EIFEDSFDFILSDIHEPPNLSDRHTVVVHVFPVKDQLPVEVSGTVRSITVKETELVYITQ
SHLHFQAPEHPDTDLMYFITQSCFSPNKPQLPDAGRLFYTETTKSMKKDAMIPVLKSFTQ
HAVTHHKIAYMPPVEDIGLEPLFVQFVFSVNDQQGGVLTGLIFNITVTPVDNQVPEMFTN
LLRVEEGGSSFLMEEHLLVRDADSPKEKLRVQVRTQPRHGRLELQGVVLSEGESFQLQDL
KTLRVRYIHDDSETTRDSIGLTITDGINSAQSELLVQILPVNDEPPQLGLGLKDGLSCKE
GSRVQITAEYLFATDADSDDTRLTYMLARTPTHGVLQRNGVIVDKFSQLDVLNGLIFYLH
TGGEIGPDPISDTVTLIVSDGEAGTDGCCQEDAVPPPVPLHGTLPVYDLNVTVIPVNNKA
PSIIIGKMLVVDEGSAVCLCGDLLTATDPDTKPDHLNFFLEIPPQYGFLENTLPSPGFEK
SNAGIQVVSFSQLHLSSGFINYVQSIHLGVEPTADHFTVSVSDGVHKSEPVPFYIIINPT
NDEAPSLFLQNFTVMEGGMKNLNPAILDAVDLDAPPNLLSFTILVPPAHGTLLHGIYGLD
MSQYKDMDKEILQRSLLVHSFTVQALGQGMKIMYMHDDTETREDTFTMQLTDGRHAVQGT
AWVHILPVNDEMPRLIKNAGLEVEALERRVISSVVLEAEDLDTPSNQVYYILNASPRFGL
LQLKTEAGLTDLNAGQNFTQADVEMNRLLYKHTTFSGLKGHDHFHFFLSDRDNDTPPQSF
FITVQTVQKGDISLITKPMTISEGERVVLTTDILMATDSGSQSFELVYTVTVPPKHGHLH
IVQYPGIPLLSFTQMDVASHRVCYTHDNSHSTDHDSFSFDISNGVTSIRSSLTFIVEHHD
RIPPTLSINTGLQLTESTTRTISPEHLQLSDPDTPLENLTYTVIQPPQYGKLLLKGFPMS
RTHFTQLDINNMHLSYQHLNSFSKIDRFTFQPSDGTNKGYLEYGQLKEQAAVFTIQIEVL
DKTPPHIVTKGTPSTVEYLQNNQHGIYITSKDLQASDPDSPYQEVEFIITRPPRFGYLEN
AITGGYIKGRFTQKDVDQKAVRYVIPSDMEVTADSFEFQLTDPAGNIMLPEVMELRWSRV
ELTASCYRVCENAGTLAVQVMRSGNSIDPAYVGIQVEDGTAKVGKDFTHSSASLIQFDPG
VTVKFWNIYLKDDGLEENNEKLEVVLKAQKNAVLGATSRASVEIVDPRHGRCDPDDLIVE
DDEKKSTVLYPPRFHKPPPPPALTPGTAIEDYTPDPNTGIAWENYPPRGDVPYRTQFIRF
SGGEAADQPFLSQGRRQLRLLGNNRSGLRQESSNTNWLNRLTPIRPEMEIPVPRVHPELE
ITPIWNWPGLSADSRSAETPQRDFPTGFTSALRQHKSTKAVSVGCLPGWTHYRRRCYILG
PGVASWRNAQHACTVLDSHLTSVRSKTHMKWLWRFGGKQPFWIGLSGFPDQWFWADGTPL
KFSRLKKNKASDNHAPTGSSHSCVLAQDQKIWTRENCTIAEHKYICSASAEVNK
NT seq
6465 nt
NT seq
+upstream
nt +downstream
nt
atgggggtggtggaccatgtatggacactggttgccttaagcctcatcctgcccctgacc
caggcagaaagtgtattgaggttgaacaatggactgcgggtgatccgaggccagagtgtt
tctgtgaccacagaagagctgcagttcaactctgatgggacctcagaggcctgcaaagtg
gaggtggtgctcaatgagcctgtgactcaaagggtgggaaaacttactccgcaggttttt
gactgccacttccaccctgatgaggtgaaatatatccataatgggagcccattactggag
gaggacacagtcatgctgagagtctatagattcacacattcagagacatttactgagacg
ttcttcctgaaggttcaggttctggaagctcagaggagtctgatagagtttgggaaagtt
cctctggtggtttcagagttttacggcctttctaacaccattgacagcagtgtattgacc
ttcagatctgagcctgatgtgatctgtactgtccgtctcctcacctctgagatcagcgtc
ccgatgttgggtcaggtcattaaagaggatctggcacagacagatcaggcatctgtgcag
aaccctgggctgaggaaaggtcgacaaacagctatttcttgccctggaaataaggcctgt
gtccacaacaccagagaggtacgcttcctgaaggccagttgcagtgagttcctcacttca
ggcttaaagtaccaacatctcagccctccttcacctgaaattgactatgtgccactccga
gtagaaatcagagatcaaaacactcgagccctcttgaagacggaaagtgtttggctccca
gtcctgatccatggagccatgcagaaccagcctccccatgctgctttcatgtccatgttc
atcctagaagtagatcagttcatcctgacccccatgaccacagctgttctggatgccaaa
gacaatgagaccccacaggctcagctggtgtttaacgtgaccaagcctccagcagagggc
tacatcacacatctggatgatcataccaaggctgtattctccttctcttggcaagacctg
aatgacataaagattgcatatcagcccccaaacagcagccacaccagcagaaagaatatt
gaggttgatttccaggctatagatggcttcttcacaactagtcctcctattatggtgcat
atctcaatccgcacagcagaaacaaatgctcctcgagtctcctggaatctggggctggat
ctactggagggtcagtccagaccaatcacgtgggagaacttacagattgtcgataatgac
aacatagacgccgtgactctgatagctgtggacggtcctctacatggacgactcagtgtt
cgaggtggaaagggcttcatgttcaaagtgaaggacctccgtgagggcatggtggtttat
catcattctgatagcgacaccacgagggactacatcgtcttcagaatcacagatggacgc
cacagcattcgtcacaagtttcccatcaacatcctccctaaagacgacactcctcctttt
cttatcaacaacgtagcatttgaggtgcaggaggggggttcagtgttggtggaagagtat
atgcttatggcatcagatctggattccagcgatgactatattcactaccagcttgttact
ttccccagtgcaggaaacatagtcaggaaaagctctgcacgtgaaccaggtgttccagtg
aagacatttatgcagagggacatattacagggcctgatctactacaaacacacaggagag
gagatttttgaagactcattcgacttcatcctatctgacatccatgaaccaccaaatcta
tctgacagacatacagtggtggtccacgtgttccctgtgaaggaccagctgccagtggag
gtctccggcacagtccgttccatcacagttaaagagacggagcttgtttatattacacag
agccaccttcacttccaagcccccgagcacccagacactgacctgatgtacttcatcacc
caatcctgtttcagccctaacaaacctcagctaccagatgcaggtagactcttctacaca
gaaactacaaaatccatgaaaaaagatgccatgattccagtacttaagtcatttactcag
catgcagtaacccaccacaagatagcctacatgccccctgttgaggatatcggtcttgag
ccactcttcgtgcagtttgtcttctctgtaaatgaccaacagggcggcgtgctcactgga
cttatcttcaacatcacagtcacacctgtggacaatcaggttccagagatgttcactaac
ctgctgagggtggaggaaggtggaagtagtttcctgatggaggagcacctattggtgcgt
gatgctgacagtccgaaggagaaactcagggtgcaggtgcgaacacaaccccggcatggc
agactggagctgcagggagtggttctatcagaaggggaaagcttccaactacaggaccta
aaaacactgagggtcagatatatccatgacgattctgagactacaagggacagcataggc
cttacaatcacagatggaatcaactctgctcagagtgaacttctggtgcagatcctccct
gtgaatgatgagcccccacagcttggcttaggcctgaaagatgggctgtcctgcaaggaa
ggcagtcgtgtgcagattactgctgagtatttatttgctacagatgcagacagtgatgat
acccgactcacctacatgctggctcggactccaacccatggggtgctgcagaggaacgga
gtcatcgtggacaagttctctcagcttgacgtgctcaatggcctcatcttctacctgcac
acaggaggtgaaattggtccagatcccatatcagacactgttactcttatagtgtctgat
ggagaggccgggacagacggttgctgccaagaagatgcagtcccaccacctgtcccttta
catgggacacttcctgtgtatgaccttaatgtcactgtgattcctgtcaacaacaaggca
ccatccataattataggaaaaatgttggtggtggatgagggatctgctgtgtgtctctgt
ggtgatctgctgacggctacagaccctgacactaagccagaccatttaaacttcttcctg
gagatcccacctcagtatggctttctggagaacacccttccctccccaggctttgaaaag
agcaatgcgggaatccaagtggtttctttcagtcagctccatctcagctctggattcatc
aactatgtccagtcgattcatctgggtgtggagcccacagcagaccacttcaccgttagt
gtcagtgatggagtccataagtctgaacctgtacctttctacatcataatcaaccccacg
aatgatgaggctccatctctgtttctgcaaaacttcacagtcatggagggaggaatgaaa
aatctcaaccctgccattctagatgcagtagaccttgatgctccacctaatcttctgagc
ttcaccatccttgttcctcctgctcacgggactctgctgcatgggatctatgggcttgac
atgagccaatataaggatatggacaaagagattttgcaaaggagtctactggtgcactcc
tttactgtacaagcactgggacaaggaatgaagatcatgtatatgcacgatgacacagaa
acccgtgaggacactttcaccatgcagctgacagatggcaggcatgctgtccaggggact
gcatgggtccacatcctaccagtcaatgatgaaatgccccggctgataaagaatgcaggt
ttagaggtggaggctttggagaggagggtgatctccagtgtggtgctggaggcggaagac
cttgacacccccagtaaccaggtctactatattcttaatgcgagccccagatttggcctt
ctgcaactcaagacagaggctggattgaccgacctgaacgcaggtcaaaactttacacag
gcggatgtggagatgaaccgcctgttgtacaaacacactacattcagtgggctcaaaggt
catgaccacttccactttttcctcagtgacagagacaatgacacacctccacagagtttc
ttcatcactgtccaaactgttcagaaaggtgacatttctctgatcactaagcccatgact
atatcggagggggaaagggttgtactgaccacagacattctgatggctacagacagtgga
agccaatcatttgagctcgtctacaccgtgactgtccctcctaaacatggacacctgcac
atagtccagtacccaggaatacctctgctctccttcacccagatggatgtggcttcacac
cgagtgtgctacactcacgacaacagtcattctactgaccacgactccttcagttttgac
atcagcaatggcgtgacctccattaggagtagcctcaccttcatagtggagcaccatgac
cgtatcccacccaccctgagcatcaacaccggcctccagcttacagaaagcaccacaaga
accatctcacctgaacaccttcagctcagtgatcctgatacacccttagagaatctcacc
tacactgttattcaaccaccacagtacggcaagctactgttaaaggggtttcccatgtcc
cggacccacttcacacaattagacatcaacaacatgcatctgagctaccagcatctaaac
agtttttctaagattgacaggttcacctttcagccatcagatggaaccaataaaggctat
ctggaatatggacagctgaaggaacaagcggcggttttcacaatacagatagaggtctta
gacaagacccctccacacattgtaactaaagggacccccagcacagtggaatatctacaa
aacaaccaacatggcatctacatcacctccaaagatctccaggcttcagatccagacagc
ccttaccaagaggtggagttcatcatcacacggcctccacgttttggataccttgagaac
gccatcacaggtggctatatcaagggacgcttcacccagaaggatgtggatcagaaagca
gtccgctatgtcattccctcagacatggaagtgacagcagacagctttgagttccagctc
acagacccagcaggaaacatcatgcttccagaagtaatggagctccgatggtcccgggtg
gagttgacggcttcctgttatcgtgtgtgtgagaacgcaggaactctagctgtgcaggtg
atgcgcagtgggaatagcatagaccctgcctatgttggcatccaggtggaagatggcacg
gcgaaggtgggaaaggacttcactcatagctcagctagtctgatacagtttgatccagga
gtcactgtcaaattttggaatatttacctcaaagatgatgggctggaggagaacaatgag
aagctagaggtggtgctgaaagcccagaagaacgctgttttaggtgcgacaagcagagcc
tcagtggagattgtggatcccagacatggtagatgtgacccagatgacttgattgttgag
gatgatgagaaaaaatctactgtcctatatcctccacgattccacaagcctccacctcca
cctgcactaaccccaggaacagcaatagaagactacacaccagacccaaacactgggatt
gcatgggagaactatccaccaaggggggatgtcccatatcgcacacagttcattcgcttc
agtggtggggaagcagcggaccagccattcctcagccaaggaaggagacagctaagactg
ctgggaaacaatagatctggattgagacaggaatcttcaaatacaaattggctcaatagg
ttgactccaataaggccggagatggagataccagtgcctcgtgtccacccagaacttgag
atcactccaatctggaactggcctggactttctgctgactccagatcagccgagactcct
cagagagactttcctactggcttcacttcagctttacgccagcacaagtccacaaaggct
gttagtgttggctgtcttcctgggtggacccattacagacggcgctgctacatcctgggc
ccgggtgtagccagctggaggaatgctcagcatgcatgcacagtgcttgacagtcacttg
accagtgttcgttcaaagactcatatgaagtggctatggaggtttggtggaaaacaacca
ttttggattgggctttctggctttccagaccagtggttttgggccgacggcacaccactg
aaattctccagacttaagaagaacaaggcgtcagacaatcatgcccccactggctcctct
cacagctgtgtgctagcccaggaccaaaaaatatggactagagaaaactgtacaatagca
gaacacaaatatatttgttcagcaagtgcagaagtcaacaaataa
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integrated database retrieval system
