Pangasianodon hypophthalmus (striped catfish): 113526562
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Entry
113526562 CDS
T05759
Symbol
arid1a
Name
(RefSeq) AT-rich interactive domain-containing protein 1A isoform X1
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
113526562 (arid1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
phyp03000
]
113526562 (arid1a)
03021 Transcription machinery [BR:
phyp03021
]
113526562 (arid1a)
03036 Chromosome and associated proteins [BR:
phyp03036
]
113526562 (arid1a)
Transcription factors [BR:
phyp03000
]
Eukaryotic type
Helix-turn-helix
ARID
113526562 (arid1a)
Transcription machinery [BR:
phyp03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
113526562 (arid1a)
Chromosome and associated proteins [BR:
phyp03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
113526562 (arid1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
113526562
NCBI-ProteinID:
XP_026769525
LinkDB
All DBs
Position
Unknown
AA seq
2269 aa
AA seq
DB search
MAAQVASATSLNSSPPSELKKADRDPKEESVPVEKQQENKEPGSEIGSPGRGELHERPEP
GNATGGGGGGGGESEMKNGNGNPPRLTNNQNDPAGPEANNHPGMAHQHHGSGFPPPSYGY
THHYARGPFHQHGGQQSPGMAAAAPSNMMEPYGPNSHDHGFPNHQFNSYGQFPNRAPYPS
PGYGMNSPRSAPAQAAKQQQQQQQPAGGSPTMAASYNNQRYNIANPQATSTPTLNQLLTS
PSSSRGYGSYPPSDYNNQEGANKGAADLNAAAQYGGGHPGWQQRTHHPPPMSPGSTAQTL
GRNQTPGSMDQMGKMRGQPYGAGSPYSQQPHQGPPAAQQGPAYPGQGYGPPGPQRYPMAM
QGRMQYGQQMAYGQQGPGGYGQQGQQSYYSQQGPGTHPGQQQSPYPHPPQPSAPHGQGGH
PYPQPHMPQQSQGPLGAPPPGPSQSQPPYSQPPTPQSTQSPYPQQQTSQSQPPPQGAPQP
PPASQAQSNYTHSQAAQQPPSQQTPQAPTPASQQPTVQGQPSSYSQNPSQQQQQQQQQQQ
QQSSYQRFPPPPQEISQESFSSQSSATASSQPVASTKSSSEDMQGRPSSLPDLSGSIDDL
PTGTEGALSPGVSTSGVSSSQGEQSNPAQSPFSPHTSPHLPGIRGPSPSPVGSPASATAS
RSGPLSPAAMPGSQMPPRPPSGQSDGILHPGMNQPGMGQDRGFMQRNQMPPYGSPQSGSA
LSPRQSSGGQMHGGMGPFQQNNSMGSYGPQGGQYGPQGYQRQPGYGGMPNANYPGPGMGG
SMNPMSGQGGGPPFTAMPPSRMPHAQMGGRPYGPNMGPNMGPNMGPNMGNIPPQVGSAMC
PPPGINRKPQEAAAAMQHGSTNSIHNRMPGYPNMSPGMMGSGPPYGPSMNNMPGMMNTQG
PPFPMGGNMPNNSSGMSPGPEFGMDGKLNQAQKMNNKADGTPKSDSKSKKSSSSTTTNEK
ITRLYELGTEPERKMWVDRYLAFIEEKAMGMSNLPAVGRRPLDLFRLYMSVKEIGGLTQV
NKNKKWRELATSLNVGTSSSAASSLKKQYIQCLYAFECKIERGEDPPPDIMSTDSKKNQA
KVQPPSPAGSGSLQGPQTPQSTSSSMAESGDLKPPTPASTPHSQMPSMQSGRSSVNLQDP
FADASDPAFSRRNTMTPNSGYQSGMSTPEMPGRMAPYEPNKDPFSGMRKVGEPFMAGGQG
PNSNLGDQFNRGSGGPIGNMPMGQRQQYPYGTGYERRPESGIGPENNMGPGVPQPNMMPS
NTDTGMYSPNRYPSQQQRHDSYGNQYPGQGAPPGGSYPNQQPGMFPQQQTNYKRPGEGGY
PPAKRHHDGEMYAGPFGGQQPQQQPQAPPSAPSSAQPEMYNQFGSSYPGPERRPPGPQNQ
FPFPFGRDRIQPGSGPNSQGSMPPQMMGSSMQSGPDGPQAGMWQGRGEMGYPNYPNRQGP
LGGPAQGPGYHSMNRSEEMMSSEQRMNHEGQWPGPRQPAYGPAGAGPPMSRPLQSNYQSP
QTMQNHIPQVSSPTPMPRPMESRTSPSKSPYMHSNIKMQKAGPPVPASHIIPSPVQPPMM
RRDPPFPPGSVEATQPVLKPRRRLTMKDIGTPEAWRVMMSLKSGLLAESTWALDTINILL
YDDNSISNFNLMQLPGFLELIVEYFRRCLIEIFGILREYEVGDPGQRTLLDPNALKEGEN
GEDEEEPVVMGMEEDGETEEEGEGEESSSQQRVERVSAVQSQIKTEKKAGEIKKEEEGKV
MENILPTELKTTEAPPLDLCATQERPKQASKFDKLPLKVVKKKDPFVVDCSSKLGRLQEF
DSGLVHWSIGGGDTTEHIQTHFESKIDLLQSGNRTQPTQTCRRKKASEKIESEALVVPSC
STERRKEEEQTQPQQFSTRQLTDGVSEEKDEKPANVPESSLEPVSQNEEEEPEGSNQEAS
KPALPNISSSSQSQLSVTVLEDEPHSKDEAPLITLSDWQDSLARRCVCVSNIVRSLSFVP
GNDLEMSKHPGLLLLLGRLVLLHHRHPERKQAPLTYEKEEETDKDMGQKDEWWWDCLELL
RENCLVTLANISGQLDFSIYSESICLPLLDGLLHWAVCPSAEAQDPFPTLGLNAALSPQR
LVLETLSKLSIQDNNVDLILATPPFSRLEKLFGNLVRLVGERKVPVCREMAVVLLANLAQ
GDSLAARAIAVQKGSIGNLLGFLEDSLAATQFQQSQGSLLHMQGAHFEPTSVDMMRRAAR
ALHALAKVEENHSEFTLYESRLLDLSVSPLMNSSVSHVICDVLFLIGQS
NT seq
6810 nt
NT seq
+upstream
nt +downstream
nt
atggccgctcaggtcgctagcgctacctctctcaacagcagcccgccttccgagctgaaa
aaagcggaccgagacccaaaggaggagtcggtaccggtggagaagcagcaggaaaataag
gagccgggatcagagatcggatcaccgggccgcggcgagctgcacgagcggcccgagcct
ggcaatgctacgggaggaggaggaggaggaggaggggagtccgagatgaagaacggcaac
ggcaatcctccgcggctcaccaataatcaaaatgatcccgccggacccgaagcgaataac
cacccgggcatggcccatcagcaccacgggtccggttttccgccgccgtcctacggctac
actcaccactacgcacggggcccttttcatcaacatggcggacaacaaagccctggcatg
gcagccgcggcgcccagcaacatgatggagccgtatggaccgaactcgcacgaccacggc
tttccgaaccatcagttcaacagctacggacaatttccgaaccgagcgccgtacccgagc
ccgggctacggcatgaactcgccgcgcagcgctccggctcaggcggctaagcagcagcag
cagcagcagcagccagcgggaggatctccgactatggccgcgtcttacaataatcagcgc
tataatattgcaaatccacaggccacgtccacaccgactctaaaccaactcctaacctcg
ccgagctccagccgcggatacggcagttacccgccgagcgactacaacaaccaggaaggc
gctaacaagggagccgcggatctcaatgctgctgcccagtatggagggggccatccgggc
tggcaacaaaggacccatcacccgccacccatgagcccgggaagtactgcccaaaccctc
ggtagaaaccagactccgggctctatggatcagatggggaagatgcgaggccagccgtat
ggagcgggcagcccgtactcccagcagccccaccaaggacctccagcggcccagcaaggt
cctgcgtatccaggccagggttatgggcctcctggtcctcagagataccccatggccatg
cagggtcgcatgcagtatggccaacagatggcatacggacagcagggaccaggtggttat
gggcagcagggacagcagtcttattacagtcagcagggcccgggcactcacccgggtcag
caacagtcaccgtaccctcaccctccccagccatctgcccctcatgggcagggtgggcat
ccatacccccagccccacatgcctcagcagtcccaggggccactgggagcgcccccacca
ggaccatcccaatcccaacctccctactctcagccccctacaccacagtctactcagtcc
ccataccctcagcagcagacgtcccagtcccagcctcctccgcaaggagcacctcaacct
cctccagcatcacaggcccagtccaactatactcacagccaagcagcccaacaaccacca
tcacagcaaaccccgcaagcacctacgccagcctcccagcagcccacagtgcaggggcag
ccatcctcatactcccagaatccttctcagcagcagcagcagcagcagcagcagcagcag
cagcagtcttcttatcagcgttttcctcctcctcctcaggagatttcccaggaatccttt
agctcacagtccagcgctactgcctcgagtcagcctgtggcctccactaagagctcctct
gaggacatgcagggacgaccctccagtctacctgatctgtctggctctattgatgacctg
cccactggtacagagggagcgctcagtcctggcgttagtacatctggagtgtctagcagt
cagggcgagcagagcaacccagcacagtctccgttttcccctcacacttcccctcatcta
cctggcatccgtggcccttcaccctcccctgtcggctcacctgctagtgccacggcatct
cgctccggacccctctctccagcagccatgccaggaagccagatgcctcctcggccccct
agtggtcagtctgatggtattttgcatcctggtatgaatcaacctggcatgggccaggac
agaggattcatgcaaaggaaccaaatgccaccttatggctctccccagtctggctctgca
ttgtcacctcgccaatcgtctggaggtcagatgcatggtggaatgggacctttccagcag
aataactcaatgggcagctatgggcctcagggtggccaatatggcccacaaggttaccaa
aggcagccaggctatggtggcatgcccaatgccaactacccaggccctggcatgggagga
tctatgaatcctatgtcagggcagggaggaggaccaccttttactgcaatgccacctagc
aggatgccgcatgcacagatgggtgggcgtccttatggtcctaatatggggcccaacatg
ggtcctaacatgggccccaatatgggcaacatacccccacaggttggttctgcgatgtgc
cctccaccaggcatcaacaggaagccgcaagaagcagcagctgccatgcagcatggatct
actaattccatacacaacaggatgcctggttaccccaacatgtctcctggtatgatgggc
tcaggacctccatatgggccctccatgaacaatatgccaggaatgatgaacacccaggga
ccacccttccccatgggtggaaacatgccaaacaacagcagcggtatgtcccctggtcca
gaatttggtatggatgggaaactcaaccaggcccagaagatgaataacaaggctgacggg
acacccaagtcagactccaaatccaagaaatcaagctcctccaccacaaccaatgagaag
ataactcgtctgtatgagcttggcactgagccggaacggaagatgtgggtggaccgttac
ctagcgttcattgaggagaaggcaatgggtatgagcaacctgcctgccgtgggccgcagg
cccctcgatctcttccgcctctacatgtccgttaaggaaattggaggtctcacccaggtc
aacaagaataaaaagtggcgagagcttgccaccagtctgaacgttggcacgtccagcagt
gcagctagctcgctaaagaagcagtacatccagtgtctgtatgcttttgaatgcaagatt
gagcgtggagaagatccaccacctgacatcatgtctactgacagcaagaagaaccaggct
aaggtccagccaccctccccagctggatctggttccctgcagggacctcagaccccccag
tccaccagcagctctatggctgagagtggggatttgaagcctcctactcctgcttctacc
ccacacagccagatgccctcaatgcagagtggcaggagcagtgtgaaccttcaggatcca
tttgctgatgccagtgacccagcattctctaggagaaacaccatgactcccaactcgggc
taccagtctggcatgagcactccggagatgcctggccgcatggccccttacgagcccaac
aaggacccgtttagtggcatgcgtaaagttggggagcctttcatggctggtggacagggt
cccaacagcaaccttggagatcagtttaaccgtggatcaggaggtccgattgggaatatg
cccatgggacagaggcagcagtatccatatggaacaggctatgagagaaggccagaatca
gggattggcccagaaaacaatatgggacctggagtaccacagccaaacatgatgccttcc
aacactgacactgggatgtactcgccgaatcgctacccatcgcagcagcagcggcacgat
tcctatggtaatcagtatcctggccagggtgcgcctcctggtggctcgtaccctaatcag
caaccaggaatgtttccacagcaacagactaactacaagagaccaggggagggaggctac
cctccagcaaagcgccatcatgatggcgagatgtatgccgggccgttcggtggtcagcag
ccacagcagcagcctcaggctcctcctagtgctccctcatcggctcagccagaaatgtac
aaccagttcggcagctcttaccctggacctgaacggcggcctcccggaccacagaaccag
ttccctttcccttttggtagggatcgcatacagcctggctcaggccccaactctcaaggg
tccatgccacctcagatgatgggcagctccatgcagtcaggtcctgatggcccccaggcg
ggtatgtggcagggcagaggcgagatgggctaccccaactacccaaacagacaaggaccc
cttggcggacctgcgcagggcccaggatatcacagcatgaaccgatccgaagagatgatg
tcatctgagcagcgtatgaaccacgaaggacagtggccggggccgaggcagcctgcgtat
ggccccgcgggggccgggccacccatgagccgccccctgcagtccaactaccagtctccc
caaaccatgcagaaccacattccacaggtgtccagccccactcccatgccccggcctatg
gagagcaggacgtccccaagtaaatctccctacatgcacagcaacatcaagatgcagaag
gcaggtccaccagtgcctgcgtcccatatcatcccttcacctgtacagcctccaatgatg
aggagagatcctccgttccctccagggtctgtagaggccacgcagcctgttctcaagcca
cgtaggcgactcaccatgaaagacattggcacaccagaggcatggcgagtcatgatgtcg
ctaaaatcgggtctgctagcagagagcacatgggctttagacaccattaacatcctgctg
tacgacgacaacagtatctccaattttaaccttatgcagctccctggtttcctggaacta
atagtggagtattttagacgttgcctcattgagatcttcggcattctgagggaatatgaa
gttggtgacccaggacagagaaccctgctggaccccaatgctctcaaggaaggagagaat
ggtgaggatgaagaggagccagttgtaatgggtatggaggaagatggtgagacggaggag
gagggtgaaggggaggaaagctcatcacagcagcgcgtggaacgtgtgtcagcagtgcag
tctcagataaagacagagaagaaggcgggtgaaataaagaaagaagaagagggcaaagtg
atggaaaacattttgcctacagagctaaaaacaacagaagcaccccctctagatctttgt
gcgactcaggagaggccaaaacaggccagcaagtttgacaaacttcccttgaaagtggtg
aaaaagaaggatccattcgtggtagactgctctagcaagctcgggcggcttcaggagttc
gacagtggtctggtgcactggagtatcggtggaggtgatactacagagcacattcagacc
cattttgagagcaagatcgatttactgcaatcagggaaccggacacagcctacccaaaca
tgtagaaggaaaaaagcatcagagaagatcgagagtgaggccctcgtagtcccctcgtgt
agtacggagcgaaggaaggaggaggagcagacacaaccacagcagttctctaccagacag
ttgaccgatggcgtttcagaagaaaaggacgagaaacctgctaatgtccctgagtcttca
ttggagccagtatcgcagaacgaggaagaggaaccagaaggatcgaaccaggaggccagc
aagccggctctccccaacatcagttcttcctcacagagtcagctctctgtcactgtgcta
gaggatgaacctcacagcaaggacgaagccccactaatcacgctttcagactggcaggac
tcgcttgcccgccgctgtgtctgtgtctccaacatagtccgcagtctttctttcgtccct
ggcaatgacttggagatgtccaagcatccagggctgctgctgctattgggccgccttgtg
ctgcttcatcatcgtcatcccgagcgtaaacaggcccctttaacgtatgagaaggaggaa
gagacagacaaggacatgggccagaaggacgaatggtggtgggactgtctggagctgctg
cgagagaactgcctggtcacactggctaacatttcaggtcagcttgacttttccatctac
tccgagagcatctgcttgcctctgctcgatggcttgctccactgggctgtgtgtccttct
gcagaggcccaggatccctttcctactcttgggcttaatgccgctttatctcctcagaga
ctggtcctggaaaccctcagcaaactcagtatccaagacaataacgtggaccttattctg
gcaacacctcccttcagtcgactagagaagctttttgggaaccttgtacgtctggtcggg
gaacgaaaggttcccgtatgccgggagatggcagttgtgcttttggccaatcttgcccag
ggtgacagccttgcagcccgtgccattgcggtacaaaaaggcagtatagggaaccttttg
ggctttcttgaggacagtttagcagccacacagttccaacagagccaagggtccctgctg
cacatgcagggggcgcactttgaacctacaagtgtggacatgatgcgtcgggctgctcgg
gctctacatgcccttgctaaggtggaggagaaccactcagagtttacactctatgagtcg
cggctactggacctctcagtctcccctcttatgaactcttcagtgtcccatgtcatctgt
gatgtactttttctgattggccagtcatga
DBGET
integrated database retrieval system
