Pangasianodon hypophthalmus (striped catfish): 113526608
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Entry
113526608 CDS
T05759
Symbol
limd1
Name
(RefSeq) LIM domain-containing protein 1
KO
K16682
LIM domain-containing protein
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phyp03019
]
113526608 (limd1)
03036 Chromosome and associated proteins [BR:
phyp03036
]
113526608 (limd1)
Messenger RNA biogenesis [BR:
phyp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
113526608 (limd1)
Chromosome and associated proteins [BR:
phyp03036
]
Eukaryotic type
Sister chromatid separation proteins
Aurora kinases
Regulators of Aurora kinases
113526608 (limd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LIM
zf_RING_Vps8
DUF6487
zf-ChsH2
Motif
Other DBs
NCBI-GeneID:
113526608
NCBI-ProteinID:
XP_026769636
LinkDB
All DBs
Position
Unknown
AA seq
563 aa
AA seq
DB search
MDKYEDLGLEASKFIEDLNMYEASKDGLFRMRRDAGNNPDFEETRRVFASKMTKIHMQKH
QEEMARNNLAERLNGGHVKITDGTFYTKDRPPISSSRHEAASKPPILSGPNTCYEGQKHH
PASPHDARVFSYGSNHDKDLSRLEPGNSYPQTMPLPASPSGTWASTNNPQYQASSPTLGL
SSPGSNMNRGATSPVRQSSPCQTLTPTGTPDWFPPSATGAHGEPDPHHKSSPYVSPTQHT
EPTMPQKPYGDPHHNGVPQSTGTCSAVQLSTLAQSQPEAHQPIGQAQCHTRGHSSPTVPD
TLANPTAEPARSDAHSPPQALKLPCHTLHIQPEPGPSAAEIKLEALTERLEKEMDAQPMA
DYFGSCVKCSKAVYGATQACQAMGSLYHDSCFTCSACSRKLRGKAFYYVSGKVFCEEDFL
YSGFQQSADKCSVCGHLIMDMILQALGKSYHPGCFRCVICNESLDGVPFTVDTENKIYCV
KDYHRVLAPKCAACSQPILPPEGSDETIRVVSMDKDYHVECYHCEDCKMELNDEEGHRCY
PLDSHLLCHTCHLKHIESSCLSV
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
atggataaatacgaagatttggggctcgaagcgagcaaattcatcgaagacctgaacatg
tacgaggcgtccaaggacggactgttccgcatgaggagggacgcaggaaataacccggac
tttgaggaaaccaggagggtgttcgcctccaaaatgaccaaaatccacatgcagaagcat
caagaagagatggcgagaaacaacctggcagaaaggctaaacggtggacatgtcaaaata
acagatggcacgttttacaccaaagacagaccacctatcagtagctccagacatgaagct
gcatctaagccacccattctttcaggaccaaacacatgctatgaaggacagaagcatcat
ccagccagcccacatgatgccagagttttcagctatggaagcaatcatgacaaagacctc
tcacgcctggaacctggaaactcttatcctcaaactatgcctcttcctgccagtccttct
ggcacttgggcatctacgaacaatcctcaataccaggcgtcatcacccacccttggccta
agctcacctggatctaacatgaaccgtggagcaacttctcctgttcgtcagagctcacca
tgccaaactttaacacccactgggacgcctgattggttcccaccatcagccacaggtgct
cacggagaaccagaccctcaccacaagtcctctccttatgtgagccctactcaacacacc
gaacccaccatgcctcagaaaccctatggagacccacaccataatggggttcctcaaagc
actgggacgtgctctgctgtccagctgtccacgctagcacagagccaacccgaagcacat
cagcctataggtcaagcgcagtgccacactcgaggccatagcagcccgactgttccagac
accttggcgaaccctactgcagagccggctcggagtgatgcccacagcccccctcaggcg
ctcaaactgccatgccacactctccatatacagcccgagcctgggccgtctgcagctgaa
ataaaattagaagctctaactgaacgcctggaaaaggagatggatgcccagcctatggct
gactacttcggaagttgtgtgaagtgcagtaaggctgtgtatggagccactcaggcgtgc
caggccatgggtagcctctaccacgacagctgcttcacctgcagtgcctgcagtcggaag
ctcagggggaaagctttttactatgtctctgggaaggtgttttgtgaagaggattttctg
tactctggctttcagcaatcagctgacaaatgcagtgtatgtggccacctgatcatggac
atgatcctgcaggccctgggcaagtcctaccatccaggctgcttccgctgtgtcatctgt
aacgagagcctggatggagtgccttttactgtggacacagagaacaagatctactgtgtt
aaagactatcacagggttcttgctcctaaatgtgcagcatgcagtcagccaatcctgccc
cctgagggctctgatgaaactattcgagtggtatcgatggataaagactatcatgtagaa
tgctaccactgtgaggactgtaagatggagctgaatgatgaagaagggcatcgctgttac
ccattagatagccacctgctgtgccacacatgccaccttaaacacatcgagtcaagctgc
ctgtctgtctaa
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