Pangasianodon hypophthalmus (striped catfish): 113526738
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Entry
113526738 CDS
T05759
Symbol
ddb1
Name
(RefSeq) DNA damage-binding protein 1
KO
K10610
DNA damage-binding protein 1
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp03420
Nucleotide excision repair
phyp04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
113526738 (ddb1)
09124 Replication and repair
03420 Nucleotide excision repair
113526738 (ddb1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
phyp04121
]
113526738 (ddb1)
03400 DNA repair and recombination proteins [BR:
phyp03400
]
113526738 (ddb1)
Ubiquitin system [BR:
phyp04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Adoptor protein
113526738 (ddb1)
DNA repair and recombination proteins [BR:
phyp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
113526738 (ddb1)
TCR (transcription coupled repair) factors
Cul4-CSA complex
113526738 (ddb1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
Beta-prop_RSE1_1st
CPSF_A
Beta-prop_RIG_2nd
Motif
Other DBs
NCBI-GeneID:
113526738
NCBI-ProteinID:
XP_026769853
LinkDB
All DBs
Position
Unknown
AA seq
1003 aa
AA seq
DB search
MSYNYVVTAQKPTAVNACITGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEIGMYGK
IAVMELFRPKGESKDLLFILTAKYNACILEYKQNGDSIDIITRAHGNVQDRIGRPSETGI
IGIVDPECRMIGLRLYDGLFKVIPLDRDNRELKAFNIRLEELQVIDVHFLYGCQAPTVCF
IYQDPQGRHVKTYEVSLKEKEFSKGPWKQENVEAEASMVIPVPEPFGGAIIIGQESITYH
NGDKYLAIAPPTIKQSTIVCHNRVDPNGSRYLLGDMDGRLFMLLLEKEELIDGSMVLKDL
RVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNDQGSYVAVMETFTNLGPIV
DMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSEAGRE
TDDMLVLSFVGQTRVLMLSGEEVEETELPGFVDNQQTFFCGNVAHQQLIQITSGSVRLVT
QDSKALISEWKEPQGRNISVAACNSTQVVLAVGRVLYYLQILSGELKQISSTEMEHEVAC
LDITPLGESGGESSLCAVGLWTDISARVLRLPCFSPLHKEMLGGEIIPRSILMTTFEGSH
YLLCALGDGALFYFGLDLDTGTLTERKKVTLGTQPTVLRTFRSLSTSNVFACSDRPTVIY
SSNHKLVFSNVNLKEVNYMCPLNSEGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYES
PKRICYQEVSQCFGVLSSRVEMQDVNGTTAPVRPSASTQALSSSVSSSKLFPSSTSPHET
SFGEEVEVHSLLVVDQHTFEVLHAHQFLPSEYALSLVSCKLGKDPAVYFIVGTAMVYPEE
AEPKQGRIIVFHYTDGKLQTVAEKEVKGAVYSIVEFNGKLLASINSTVRLYEWTAEKELR
TECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEVSVQSEKGGFIYLFIC
LFVCLFVCGKSEFSLQAFFFSWIRKNRQHINFKALLFPTQTRL
NT seq
3012 nt
NT seq
+upstream
nt +downstream
nt
atgtcctacaactacgtggtaacggcgcagaaacccaccgcggtgaacgcctgcatcact
ggacacttcacctcagcggaggatcttaaccttctcatagcgaagaacacacgtctggag
atctatgtggtcacggcggagggattacggccggtcaaagagatcggcatgtacggcaag
atcgccgtcatggagctcttcagacccaaaggtgaaagtaaagaccttctgtttattttg
acggcgaaatacaacgcctgcatcttggagtacaagcagaacggagacagtattgatatc
atcactcgtgctcatggaaacgtacaggatcggatcgggcgtccgtcagagaccgggatc
atcggtatcgtggacccggagtgtcgtatgattggtctgcggctctacgacggtcttttt
aaagtcatcccgttggatcgggacaaccgcgagctcaaagcctttaacattcgcctggag
gagctgcaggtcatagacgtgcacttcctgtacggatgccaggcgcctaccgtctgtttt
atatatcaggaccctcagggacgacacgtgaagacgtacgaggtttctctgaaggagaaa
gagttcagtaagggtccttggaaacaggagaatgtcgaagccgaggcctcgatggttatt
cccgttcctgagccgttcggtggcgctataatcatcggccaggagtccatcacgtatcac
aacggagataaatacctggccatcgcacctccgacaatcaagcaaagcacgatcgtgtgt
cataaccgcgtggacccgaacggctctcgctatctcctgggagatatggatggaaggctg
ttcatgctcctgctggagaaagaggaactgatcgatggatccatggtgctcaaagatcta
cgggtggaactgctgggagagacatccatcgctgagtgtctgacctacctggataacggc
gtggtgtttgttggttccaggcttggagattctcagctggttaaactgaatgtggacagt
aacgatcagggctcgtacgtggcggttatggaaacgttcactaacctgggaccgatagtg
gacatgtgtgtggtggatctggagcggcagggacaggggcagctggtgacttgttccggt
gcgtttaaggaaggttctctaaggatcattcggaatggtataggaatccacgagcacgcc
agtatcgacctgccgggtatcaaaggattatggcctcttcgctcggaggcgggcagagag
accgatgacatgctggtgctttctttcgttggccaaaccagagtgctgatgctgagcgga
gaggaggtggaggagaccgagcttccagggtttgtcgataaccagcagacgttcttttgc
ggaaacgtggctcatcagcagctcattcagattacttccggttcagtgcgactggtcacg
caggacagcaaggctttgattagcgaatggaaggaacctcagggaagaaacatcagcgtg
gctgcttgcaactccacccaggtggtgctagcggtgggacgagtgctctactacctgcag
atcctcagtggagagctaaagcagattagctccacagagatggagcacgaggtggcgtgt
ttggacatcactcctctcggcgagagcggcggagagtccagcctgtgtgccgtgggtctg
tggacggacatctcggcccgagtcctccgcctgccctgcttcagccctctgcataaagag
atgctgggtggagagatcattccacgttcgatcctgatgaccacgtttgagggcagccat
tacttgctgtgtgctctcggagacggcgctctcttctacttcggcctggacttggataca
ggcactctgaccgagaggaagaaggtgactctggggacgcagcccacggtgctccggacc
tttcgctctctttccacctccaacgtgtttgcgtgctcggacagacccaccgtcatctac
tccagcaaccacaagctcgtcttctccaacgtcaacctcaaagaggtcaactacatgtgc
cccctcaactccgagggctaccccgacagcttggctctggccaataacagcactctgacc
atcggcaccatcgacgaaatccagaagctccacattcgcactgttcctctgtacgagtcg
cccaagaggatctgttatcaggaggtgtcccagtgtttcggcgtgctctccagtcgagtg
gagatgcaggatgttaacggaaccacggctcccgtacgccccagcgccagcactcaggct
ctgtccagcagcgtgagctccagtaagctcttccccagcagcacctcccctcatgagacc
tccttcggcgaggaggtggaggtgcacagcctgctcgtggtggatcagcacacttttgaa
gtgcttcatgcccaccagtttctgcccagtgagtacgcgctgagcctcgtgtcctgtaaa
ctgggcaaagatcctgccgtctacttcatcgtcggcaccgccatggtctatcctgaggag
gcggagcctaagcagggacgcatcatcgtcttccactacacagatggtaaactgcagacc
gtagcggagaaggaggtgaaaggcgccgtgtactcgatcgtggaattcaacggcaaattg
ttggccagcatcaacagcactgtgcgcctgtatgagtggacggcggagaaagagctgagg
actgagtgtaatcactacaacaacatcatggctctgtatctgaagaccaaaggagacttc
atcctggtgggggatctgatgaggtcggtgctgctgctggcgtacaaacccatggaggga
aacttcgaggaggtgagtgttcagagtgagaagggtggttttatttatttatttatttgt
ttgtttgtttgtttgtttgtttgtggaaagagtgaattttcacttcaagctttctttttt
tcctggataaggaaaaacagacagcacataaatttcaaagctcttttgtttcccactcaa
acaaggctgtga
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integrated database retrieval system
