Pangasianodon hypophthalmus (striped catfish): 113526793
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Entry
113526793 CDS
T05759
Symbol
col6a1
Name
(RefSeq) collagen alpha-1(VI) chain
KO
K06238
collagen type VI alpha
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp04510
Focal adhesion
phyp04512
ECM-receptor interaction
phyp04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
113526793 (col6a1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
113526793 (col6a1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
113526793 (col6a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
phyp04147
]
113526793 (col6a1)
00536 Glycosaminoglycan binding proteins [BR:
phyp00536
]
113526793 (col6a1)
Exosome [BR:
phyp04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
113526793 (col6a1)
Glycosaminoglycan binding proteins [BR:
phyp00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
113526793 (col6a1)
Hyaluronan
Extracellular matrix or blood plasma proteins
113526793 (col6a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VWA
Collagen
VWA_2
VWA_3
VWA_CoxE
IgGFc_binding
GCS2
Motif
Other DBs
NCBI-GeneID:
113526793
NCBI-ProteinID:
XP_026769947
LinkDB
All DBs
Position
Unknown
AA seq
1012 aa
AA seq
DB search
MAQNGFLLTALLFCSAWAGLLAQDKNRFRECPVDLFFVLDTSESVALRGVAHYYVNKIKD
FATRFIDELKDTRQPCDRYISWNSGALHYSDEVELVKGLVEMTAGGRSTLKTAIRSIKYI
GKGTYTDCAIKQGIAELLIGGSYYNENKYIVVVTDGHPVSGYKEPCGGIQEAANEARQHG
IKVFSVAISPDQEESRLSIIATDMRYRQNFTAVDNTSSTQMNTIHTIIEMITNETKDVCC
SFDCTAPSGLPGPPGEQGYRGEPGRQGLPGEKGEAGLPGKPGDPGPVGYQGMKGDQGERG
YKGERGHKGFKGDKGLPGRDGIDGRKGEPGFDGLSGCKGSPGEDGSNGPPGPKGDPGSYG
QKGAKGEPGADGGAGRPGNYGDIGNKGERGPPGADGENGERGDEGAQGPDGPRGDRGAPG
EKGEQGARGNRGPRGDPGDPGPRGEPGREGSAGPNGDPGETGKPGAPGYRGDEGSAGQEG
GKGPRGIKGAPGDRGFMGERGEDGSPGNGTEGCHGFQGYHGPRGDPGEPGSKGPPGPKGD
DGEPGDPGVDNDQRPGPPGPKGPKGHRGREGSSGPPGPPGPPGVDDCEILDIIMRMCSCC
ECKCGPLNITFIVDSSESIGANNFAIAKDFIIAVIDRLVRDQQVKFGVNDSHVGVVQYSG
ANAQEVVKLGDPDIWNITALKQAIKELRWLAEATYTGEALEFSWNNMINRLGTDHVNSVV
LVLTDGRSDTTRDKVPLNTLCGRGLQVVGVGIVDYSGKQPNSDQVEDVSCSSDPVKPGAS
FVLNNFGMLLDDTFLKNLTDTMCESKKCPNYTCPIYFRNPSDILIMMDSSASVGYKNFEL
TKNFTEKLVRRFLSADKGENVQVRVAVGQYSNTANIDVDFADNYTVVAAQLAEASFQNAG
TQLTEALRFAINQFRGGQNRKKKVLLFSDGRSQGMNERQLEEAIGEINRQGIELFVLAVE
NQLNQHNLHIMASRGRRNDNIYASRHLIRAPDYHSLLRGVFYQTVSRKISLD
NT seq
3039 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaaaatgggtttcttttaacggctcttctcttttgctcggcgtgggcaggactg
ttggctcaggacaaaaataggttcagagaatgccctgtggacctattctttgtgctggac
acatcggagagtgtggccctccgaggagtcgcacactactatgtcaacaagatcaaagac
ttcgccacgcgcttcatcgatgaactgaaggatactcgccagccatgtgaccgctatata
tcgtggaattctggggctttgcactacagtgatgaggtcgagctggtgaaaggcctggtg
gaaatgactgcaggtggtcgcagtacacttaaaacagccataaggtccattaaatatatc
ggcaagggaacatacaccgactgtgccattaagcagggtattgcagagctgctcataggt
ggctcttactataatgagaataagtacattgtggttgtgacggacggtcacccagtcagt
ggttataaagagccctgtggagggattcaagaggcagcaaacgaggccaggcagcatggc
atcaaagtgttttctgtggccatctccccagaccaggaggagtccagattgtctatcatt
gccacagacatgaggtacaggcagaacttcactgctgtggacaacaccagttccacacag
atgaacacaatccacactatcatcgaaatgatcaccaatgaaacaaaggatgtgtgttgc
tcctttgactgcactgcacccagtggcctccctggcccacctggtgaacaagggtacagg
ggggagcctggtagacaagggctgccaggagagaaaggagaagctggactaccgggaaag
cctggtgatcctggtccagttggttatcaaggcatgaagggagaccaaggagaaagagga
tataagggtgaaagaggccacaagggcttcaagggtgacaaaggacttcctggaagagat
ggaattgatgggcgtaagggtgaaccagggtttgatggtctatcaggttgcaaagggtcg
cctggggaggatggttcgaacggaccaccaggcccaaaaggagaccctggttcttatgga
caaaaaggagcaaaaggagagcctggcgcagatggtggcgcagggagacctggtaactat
ggagacattggaaataagggtgagagaggaccaccaggtgctgatggggaaaacggagaa
agaggagatgaaggagcacaaggaccagatggcccaagaggcgacagaggtgcaccaggt
gagaaaggtgaacaaggtgcccgtgggaacagaggacccagaggagaccctggtgatcca
ggtcctcggggcgagccaggacgtgagggatcagctggacctaatggtgacccaggtgag
acaggaaagcctggggctccaggttaccgtggtgacgagggttctgcaggacaagagggt
ggtaaaggacccagaggaatcaaaggtgccccaggagacagaggctttatgggagagagg
ggagaagatggatcaccaggaaatggaacagagggttgccatggtttccagggttatcat
ggtcccaggggagatcctggagagcctggaagcaaaggaccaccagggcccaaaggagat
gatggcgaacctggtgaccctggtgtagataacgatcaacgaccaggaccaccggggccg
aaaggaccaaaaggacatagagggcgtgaaggatcatctggacctcctggacctcctggg
cctcctggagttgatgactgtgagatcctggatatcatcatgaggatgtgctcttgttgt
gagtgcaagtgtggacccctgaacattacctttattgtggacagctctgagagtattggg
gctaacaactttgctattgctaaggacttcatcatagctgtcattgacagactggtcaga
gatcagcaagtgaaattcggcgtgaatgattctcacgttggtgtggtgcagtacagtgga
gcaaatgctcaagaggttgtgaagcttggtgaccccgacatctggaacataacagcgctc
aaacaggctattaaagagttgcgttggctggctgaagccacctacactggagaagccctt
gagttttcatggaataacatgatcaaccggcttggcacagaccacgtgaacagtgtcgtg
ctggtcctgaccgatggtcgttcagatactacaagagataaagtgcctctaaacacactg
tgtggtcgaggcctacaggttgttggtgtaggtattgtagactattcaggtaaacagccc
aacagtgatcaggtggaagacgtaagctgttcaagtgatccggttaaaccaggcgcctcc
tttgtccttaacaacttcggcatgctcctggatgatactttcctcaaaaacttgactgac
acaatgtgtgaaagcaagaagtgccccaattacacttgtccaatttactttaggaatccc
tcagatatcctgattatgatggatagctcagctagcgtgggctacaaaaactttgagttg
accaaaaacttcacagagaagctggtaagacgcttcttgtccgcagataaaggagaaaac
gttcaggtccgtgttgccgttgggcagtacagcaacaccgcaaacatagatgttgacttt
gctgacaattatactgtagtggctgctcagctcgcagaggccagtttccagaatgctggc
acgcagttgactgaggcactcagattcgccattaaccaattcaggggaggccagaaccgg
aagaagaaggtgctgctgttttcagatgggcgctcacaaggcatgaacgaaaggcaatta
gaagaagcaataggggaaattaacagacaaggtattgagctttttgttctggctgttgag
aatcagctgaatcaacacaacctgcatatcatggcaagtcgtggacggcgcaatgacaac
atctatgcctcccgccatctaattagggctcctgactatcactccttgcttaggggagtc
ttttaccaaactgtgtcccggaagatttcactggattga
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