Pangasianodon hypophthalmus (striped catfish): 113526797
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Entry
113526797 CDS
T05759
Symbol
ddx6
Name
(RefSeq) probable ATP-dependent RNA helicase DDX6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113526797 (ddx6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phyp03019
]
113526797 (ddx6)
03036 Chromosome and associated proteins [BR:
phyp03036
]
113526797 (ddx6)
Enzymes [BR:
phyp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
113526797 (ddx6)
Messenger RNA biogenesis [BR:
phyp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
113526797 (ddx6)
mRNA degradation factors
5'-3' decay
Decapping complex
113526797 (ddx6)
Chromosome and associated proteins [BR:
phyp03036
]
Eukaryotic type
Gene silencing
piRNA pathway
113526797 (ddx6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
SNF2-rel_dom
AAA_22
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
113526797
NCBI-ProteinID:
XP_026769948
LinkDB
All DBs
Position
Unknown
AA seq
486 aa
AA seq
DB search
MSTARTENPVILGLTNQNGQKRGSAKPTGGPGGGGGGGGPQTTQPAQIKASSTVNNGNSL
PVPTANTVIKPGDDWKKNLKLPPKDMRMKTSDVTATKGNEFEDYCLKRELLMGIFEMGWE
KPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERIDLKKDCIQALVIVPTRELA
LQVSQICIQVSKHMGGVKVMATTGGTNLRDDIMRLDETVHVVIATPGRVLDLIKKGVAKV
GQVQMIVLDEADKLLSQDFVQMMEEILSFLPKQRQILLYSATFPLSVQKFMNAHLQKPYE
INLMEELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQL
GYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLGET
YLHRIGRSGRFGHLGLAINLITYDDRFNLKGIEEQLGTEIKPIPSSIDKSLYVAEYHSES
AEEVKL
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atgagtacagccagaacagagaacccagttattctgggcttgacgaaccaaaatggccag
aagagaggctctgcgaagccgacggggggacctggtggtggtggtggtggcgggggacct
cagacaacacagcccgcccagattaaagcttccagcacagtcaacaatggcaactccctg
cctgtgcccacagcaaacacggtcatcaaacctggggatgactggaaaaagaatttaaag
cttcccccaaaggacatgcgcatgaaaacttctgatgtaactgctaccaaagggaatgaa
tttgaagattactgcctgaagcgggagttgttaatgggcatatttgaaatgggctgggaa
aaaccatcacctatccaggaggagagcattcccattgctttgtctggcagggacattctg
gctagagccaagaatggcacaggaaagagtggtgcctacctcattcccttacttgaacgt
attgatctgaagaaagactgcatacaagcactggtcattgtccccaccagggaactggct
ctgcaggtgagccagatctgcatccaggtcagcaaacacatgggtggggttaaggtcatg
gcaaccacaggtggaaccaacctccgtgatgatattatgcggcttgatgagaccgtgcac
gttgttatcgccactcctggaagagtgttggatctcatcaaaaaaggagtagccaaagtt
ggccaggtgcagatgatcgtgttggacgaagcagacaagctcctgtctcaggacttcgtg
cagatgatggaggaaattctgagcttcttgcccaagcaaaggcaaattctgctgtattct
gcaactttcccactaagtgtacaaaagttcatgaatgcccatctgcagaagccttatgag
ataaaccttatggaggagctgaccctgaagggtgtgacccaatattacgcatacgtgact
gaaaggcagaaagtccattgccttaatactcttttctctaggctccagatcaatcagtct
ataatcttctgcaactcgtcccagcgagtggaactcctggccaagaaaatctcccagctg
ggttattcctgtttctacattcatgccaagatgagacaggaacacaggaaccgtgtgttc
catgatttcagaaatggtttgtgccgaaatcttgtctgcacagatttgtttacgagaggg
attgacattcaggctgtgaatgtggtgatcaactttgattttcccaaacttggggagacg
tatcttcatcgtattggcagatctggtcgttttgggcacctgggtctggctattaacctg
atcacctatgatgaccgctttaacctgaaaggcattgaagagcagctgggcacagagatc
aagcccattcctagcagcatcgataagagcctgtatgtggcggagtatcacagtgagagc
gctgaggaggtcaaactgtga
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