Pangasianodon hypophthalmus (striped catfish): 113526878
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Entry
113526878 CDS
T05759
Symbol
lama1
Name
(RefSeq) laminin subunit alpha-1
KO
K05637
laminin, alpha 1/2
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp04510
Focal adhesion
phyp04512
ECM-receptor interaction
phyp04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
113526878 (lama1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
113526878 (lama1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
113526878 (lama1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Laminin_G_1
Laminin_G_2
Laminin_EGF
Laminin_B
Laminin_N
Laminin_I
Laminin_II
Laminin_G_3
TS_C
Motif
Other DBs
NCBI-GeneID:
113526878
NCBI-ProteinID:
XP_026770100
LinkDB
All DBs
Position
Unknown
AA seq
3090 aa
AA seq
DB search
MRLVLALVLLCASSVNCQQRGLFPAILNLASNAEITTNATCGDPVPEMYCKLVEHVPGRR
IRNPQCRTCDANSTNPKERHPITYAIDGTNLWWQSPSIKNGRQFHWVTITLDLRQVFQVA
YVIIKAANSPRPGNWILERSLDGVKYHPWQYYAISDTECLTRYNVTPRLGPPTYKRDNEV
ICTSYYSRLVPLEHGEIHTSLINGRPGADDLSPELLEFTSARFIRLRLQRIRTLNADLMT
LSYRDPKDVDPIVTRRYYYSIKDISVGGMCICYGHAQSCPWDPVTKKLQCMCEHNTCGES
CNECCPGYHQELWQPGTISEGNTCEKCNCHDKAEDCSYNQTVADLKMSLNTHGQFVGGGV
CISCTQNTAGINCETCADGYYRPHKVSPYADEPCVECNCDMRGSVSHVCVKDDNQANPGK
GVFPGQCVCKEGFAGEKCDRCAFGYRDFPLCTRCECSLEGSHNIDPCRECICKANVMGAN
CDLCKQGFYNLQASNPEGCTECFCFGVSDVCESSTWTTSSIVHRDGWLRPSAHSTSIYTA
PIIEDNLIIANNATAARSYLSVSAWTAPEPFLGNKLTAYGNFLNFSVAYDVSVDNNVDKT
LPSHFDVIIEGNGKALRHLLPRRVFLNPHREQQVALELLPHVFTDVQTDRRVQRDELMSV
LADVASLRIRAHLNTSVDGVLRLSTVHMAIADPSSTSSDISPDVEQCECPWGYSGTSCET
CISGFYRVGGILFGGNCLQCECNDHATECDINGVCLDCSHNTAGPHCDQCLPGYYGDPTE
GTEEDCQRCACPMTLASNNFSPTCTLRGPGDFTCDQCEQGYTGSKCERCANGYYGNPTIP
GQKCSVCECNGNVDPSEPGYCDSVTGECLKCVRHTAGRHCERCEDGYYGDAIIAKNCQAC
GCRANSSVSAVCNIITGQCECKANVMGDKCDRCQVGFFGINSGDGCRECKCNQSGSVSDA
CDEAGQCQCTVGVAGDKCDRCQHGYYNFTDSGCTPCDCAHTHGNCNAETGKCICPPNTRG
EKCEICDDDHWGHDGVTGCKSCDCNPAGSNSSQCDLLSGQCVCRPHFTSQKCDRCTLGFR
NFPECTACNCNSNGTHKEFCDAELGVCGCEDDGQCVCKENVGGGGCDECKSGTFGLWRQN
PAGCSPCFCFGVSSICEELGGLIRVPITVGPTTEHLRVVSQSDLQGTLKGVYHTDGEILL
DMAQLQTGSTLTGPYYWRLPQPFQGSKLLSYGGELSYAVSFAAMHGSGLSNHEPQVLMRG
GHLRKLVIYTDVPAPENGIRTTQRVPLTEHKWKYFNAVSEKAVSHEDFMSILSNVEYIII
KASYGTGLQQSRISNISMETAVDVDEAPEGMEVARLVEVCECPPGYAGLSCQECAPGYYR
QRVSELNMKGKNRPLIQPCVPCQCNNHSLACDLDTGECLGCQHHTAGEHCNVCAPGYYGQ
VKGTISDCSLCACPLQSNSFSPTCVLDGVGDFRCNACKPGYEGRYCERCSLGYYGNPSQP
GGTCEECVCNESGSLHNMCDAKTGKCECKTGFRGHLCDQCEDRHVLIDDQCVSCNDECTG
VLLDDVDAIETSIQSLNLSGVILAPYSLLISLENQTQELQIKLSLEQNSSYQLNRGDEDV
THLTKQVDQLQQKAMNVSAFGEDVLWASEESINQGKRFLDLISNIHTTIQVLEEEVSNLN
ETAREKVEEGHSAVLLEQMEAVLEKIRAIDLVNSNSTAVEELSAAIVVLESVQKEIVELS
DQTENLKHNISTDLARHHQHLQDVQELLNTAKTRNNHTEHLLMNIHTNLEECKTLRHNVS
SLNQSVEAHLEEAQDFLTDALHIAEDMRNLTARVEEAKEELLQWSPTVRKHVDTLVMELT
KRDALQLVYRAEDHAQALKTEAQAMYSTLSGVREASLNATTISQGISDISAYIHQAEDVA
LTVNQNASYTLNLTLHSNESLTELGKQAVQRSLKILNESADLVNCTEGLVLNVSAVNSKL
SVVRASMHNFSQLLPEALINLASLPSGNREQFLEAKQQAAKANASLQKALEHLDNYRIKL
EASSSAVSSANSSASTVNAMVKDSEDTASAAESKLKEAQLRTERLFDRLQPLKLLGENLS
RNLSEIKEMINQARKQAASIKVAVSADRDCVRAYKPEITSSNFNTLTLTVKTAEPDNLLF
YMGSSSSVDFMALEMRHGKVAFLWDSGSGLTKLEYPNLQINNNKWHRINATRFGRQGSLT
VQQLDSEPMPSVKTTAPGPSTIMEVNKSTWVFVGGLGGQIKKSPAVKMTHFTGCIGEASL
NEKNIGLWNYAEREGGCGGCFMRPQTEETSFYFDGSGYSVVEKSLRPISTSIVMFFKTLS
PNGLLLYLASNGTRDFLSIELVEGKVHLTFELGSGPLTLTSTKAYNTGLWYKIALQRNKR
KGYLSIMTADTPSEREVMEAESPGTASDLNRSDLDPIYIGGLPTSRPIRRQVIARSYVGC
IKNVEIARTNFDLLRDAYGVKKGCILKPIRSVSVLGGGYVQMPEVTVGPQSELMSSFSSR
NSSGLILAGFSSTGGHKRRHTQQPFLAVMLVSGRVEVHVSMAEGGGMHKAVVKSQNGTFS
DGQEHSLILQRNKRTLTVYVDEDQQETVRLGLTAEKVLTLSNFYIGGIPPGEATGALVST
TSFYGCIRNMAVDTMLLDLSGAVKYEGVDMDSCLLEERPKRLLLPDEGDVEPEPTAGPDQ
GPLSPPSELSAVTPGATTCTAMDNTGSIPDAYQLGLSKNSHIMFGFKNKTVRSSFTIELS
IRTLAHSGILYYMANANQQDYAVLQLLGGRLLFSCDLGKGPAITTSHTHISDGQWHTVRT
DFSKKSILISVDGAESERTAIKGQSLDVEGKLYVGGLPTGYTAKRIGNVTHSVAGCVQKV
KLNNAELNLHNAAASHDTGSCFSSVQDGTFFNGSGYAAFMKEGYYVGSDVTVSLEFRSTA
LDGVLLGVSSARVDAIGLELLNGQVVFNVNNGAGRFSAVSRSRSLLCDGRWHTLVAKKLK
HSLSLTVDGVTVSAENPHSSSTSAETKNPIYVGGYPANVKQSCLSARTSFRGCMRNLRLS
KGHIIDVLEFSLAFTRPGVSPHSCPAATAA
NT seq
9273 nt
NT seq
+upstream
nt +downstream
nt
atgaggctcgtcctggcgctcgtgctcctgtgtgcatcctcagtcaactgccagcaaaga
ggtctctttcctgcgattctgaacttggccagcaatgctgaaatcaccaccaatgccaca
tgtggggaccctgttcctgagatgtactgtaagctagtggagcatgttcctggcagacgc
atccgaaacccccagtgcaggacatgtgatgctaacagcacgaaccccaaagaacgacat
cccatcacctacgctattgatggcaccaatctgtggtggcagagtcccagcatcaagaat
ggccgtcagttccactgggtcaccatcacgctggatctacgacaggtcttccaggtcgct
tatgtcatcatcaaggcagcgaactctcctcggcctgggaactggattctggagaggtct
ttggatggtgtcaagtaccacccgtggcagtactatgccatcagtgatacagaatgtctg
acccgttacaatgtcaccccacgtcttgggcctcccacctacaagagagacaatgaggtt
atctgcacctcctactactcccgactggtgcctctggaacatggagagatccacacgtct
ctgataaatgggcgtccgggtgctgatgacttgtctcccgagctgctggagttcacctct
gcccgatttatccgcctgcgtctgcaacgcatccgcacactcaacgccgacctcatgacc
ctgagctatcgtgaccccaaagacgtagaccccatcgtcacacgccggtattactactca
attaaggatatttcagtgggcgggatgtgtatctgctatggccacgcccagagctgtccc
tgggaccctgttaccaagaaactgcagtgtatgtgtgagcacaacacttgtggggagagc
tgtaatgagtgttgtcccggctaccaccaggaactgtggcaaccagggaccatctctgaa
ggcaacacatgcgagaaatgcaactgtcacgacaaagcagaggactgttcttacaaccag
acagtggctgatctgaagatgagcttgaacacgcatggccagtttgtgggaggtggtgtg
tgtatcagctgcacgcagaatactgcaggaattaactgtgaaacttgtgctgatggttac
tacagaccacacaaggtatctccatatgctgatgagccctgtgtggagtgtaactgtgat
atgagaggctcagtcagccatgtctgcgttaaagatgacaaccaagcaaatcctggaaaa
ggtgtttttccaggtcagtgtgtgtgtaaagaggggttcgcgggagagaagtgtgatcgc
tgtgcattcggttacagggactttcctttgtgcacacgctgtgagtgcagccttgaagga
agccataacatcgacccttgtagagagtgtatctgcaaggccaatgtgatgggggcgaac
tgtgacctgtgtaagcagggcttctacaacctgcaggccagtaacccagagggctgcact
gaatgtttctgtttcggtgtctctgacgtgtgtgaaagctccacctggaccacctcctcg
atagtacacagagatggttggctccgtccctcagctcacagcacctctatctatacagcc
cctatcatagaggacaacctcatcatcgctaataatgctaccgctgctaggagctacctc
tctgtgtctgcctggactgctccagagcccttcctcggcaacaagctgactgcatatgga
aactttctaaacttcagcgtggcatatgatgtatcagttgacaataatgtggacaaaact
ctcccgtcgcattttgatgtgattattgagggaaacgggaaggcgctgcgccatcttcta
cccaggcgtgtattcctgaatcctcacagagagcagcaggtggcactggagctcctgccg
catgttttcacagatgtacagacagaccgaagggtgcagagagacgagctgatgagtgta
ctggctgatgtggccagcctcaggatcagagctcatctcaacaccagtgtagatggagtg
ctaaggttgagcactgtgcacatggccatagctgatcccagctccacaagctctgacata
tctccagatgtggagcagtgtgagtgcccttggggatactccgggacatcctgtgagacc
tgtatttctgggttttatcgagttggaggcatcctgtttggagggaattgtctgcagtgt
gaatgtaacgatcatgccaccgaatgtgacatcaatggagtgtgtctggactgctctcac
aacactgcaggaccacactgtgaccagtgcctgccaggttactatggtgaccccacggaa
ggcacggaggaagactgtcagcgatgtgcctgcccaatgacactggcgtccaacaacttt
agtcctacttgtactctgcgaggtcctggagacttcacatgtgaccagtgtgagcaagga
tacactggaagcaagtgtgagaggtgtgccaatggttattatggcaaccccaccatccct
ggtcagaaatgctcagtgtgtgagtgtaacgggaacgtggacccgtctgaaccaggctac
tgtgactctgtcactggcgaatgcttgaagtgtgtgagacacacagcaggccgacactgc
gaacgctgcgaggatggttactacggcgatgctattatagctaagaattgccaggcctgt
ggctgccgtgctaacagctcagtttccgctgtgtgtaacattataaccggccagtgtgag
tgtaaagccaatgtgatgggagacaagtgtgaccgctgtcaggtcggtttcttcggcatt
aacagtggcgatggctgcagggagtgcaaatgcaaccagtcaggatcagtatcagatgca
tgtgatgaagctggccagtgccagtgtactgttggtgtagcgggtgataaatgtgaccgc
tgccagcacggctactacaatttcacagacagcggctgcacaccttgtgactgtgctcac
acacacggtaactgcaatgctgagacaggcaagtgtatctgcccaccaaacaccagagga
gagaaatgtgaaatatgtgacgatgatcactggggtcatgatggagtgactggatgcaag
tcatgtgactgcaatccagccggctccaactcatctcagtgtgacctgctcagtggtcag
tgtgtgtgtaggccgcacttcacctctcagaaatgtgaccgttgcactctaggctttagg
aatttcccagagtgcacagcgtgcaactgcaattctaacggcacccataaggagttttgt
gatgcggaactgggagtgtgtggatgtgaggacgacggacagtgtgtgtgcaaggagaat
gtaggtggtggtggttgtgatgagtgtaagagcgggacatttggtctgtggaggcagaat
ccagctggctgcagcccctgcttctgttttggagtctcctccatctgtgaggagcttggt
gggctgatcagagtgccaatcaccgtgggtcctacgactgagcatctacgtgtagtaagc
cagagtgacctgcaggggacactaaagggtgtttatcacacagatggagaaattctgctg
gatatggctcagctccagactggttcaactctcactggaccttattactggcgactgccc
caaccctttcagggcagcaagctgctgtcctatggaggggaactctcatatgctgtaagc
tttgctgctatgcatggatcaggtctgtccaatcatgagcctcaagtgctgatgagggga
gggcacctgaggaagctggtgatttacactgacgtgcctgctccagagaacggcattcgc
accacacagcgtgtccctctcacagagcacaagtggaaatacttcaatgcagtgtctgag
aaagctgtgagtcacgaagacttcatgtccatcctgagtaatgtggagtacatcatcatc
aaagcctcatatgggacaggactccagcaaagcaggatctcaaatatctccatggagaca
gcagtagatgtggatgaagctcctgagggcatggaggtggccaggctggtggaggtgtgt
gaatgccctccaggttatgcaggcctgtcctgtcaggaatgtgctccaggttactacagg
cagcgagtatctgagctcaatatgaagggcaagaacaggcctctgattcagccctgtgtg
ccctgccagtgtaataaccatagcttggcatgtgacctggacacgggcgagtgcctgggc
tgtcagcaccacacagcaggagagcactgcaatgtatgtgccccagggtattatggacag
gtgaagggaaccatcagtgactgctcactttgtgcttgtccactacaaagtaacagtttc
agccccacatgtgtattggatggtgtcggtgatttccgctgtaatgcctgtaaacctggc
tacgagggacgctattgtgagaggtgttcactgggttactatggtaacccctcacagcca
ggtgggacgtgtgaggagtgtgtgtgcaacgagagcggctcactgcacaacatgtgtgac
gcaaaaacagggaagtgcgagtgcaagactgggttcaggggtcatctttgtgaccaatgt
gaagacagacacgtcctcattgacgaccagtgtgtgtcatgcaatgatgaatgcactggg
gtgctgctggatgatgtagatgctatagagacctcgatacagtccctgaacctcagtggt
gtcatcctggctccatacagcctgctgatcagcctggagaaccagacccaagagcttcag
atcaagttgtcactggagcagaactcaagctatcagttgaacaggggagatgaagatgta
acacatctcactaaacaagtggatcaactgcaacaaaaggctatgaatgtatccgctttt
ggtgaagatgttttgtgggcttctgaagagagcattaatcaaggaaaacgctttcttgac
ctgatttctaacattcacactaccatccaagttttggaggaggaagtgagcaatctcaat
gagacagcgagagagaaggtggaggaaggacacagtgctgttctgctggagcagatggag
gccgtgttggagaagattagggccattgacctggtcaacagcaatagcactgctgtagaa
gaacttagtgctgcaattgtggtgcttgagagtgtgcaaaaggaaatagtggaactctcc
gatcaaactgagaatctgaagcacaacatctccactgacctagcaaggcatcaccagcat
ctccaggatgtccaggagcttctgaacacagccaagactcgcaataatcacacagaacat
cttctgatgaatatccacaccaatctggaggagtgcaagacattgaggcataatgtgagt
agtctgaatcagtcagtggaggcacatctggaggaagctcaggattttttgactgatgca
ctccacatcgctgaagacatgcgcaatctcacagcgagggtggaggaggctaaggaggag
ctgctgcagtggagccccactgtgaggaaacatgtggacactctagtgatggagctgacc
aaaagagatgcactacagttagtgtacagagcagaggaccatgcccaagcactcaaaaca
gaggcacaggcaatgtacagtactttgtctggagttagagaagcatcgctgaatgccacc
accatttctcagggaatctccgacatcagtgcctacatccatcaggctgaagatgtggca
ctcacagtcaatcagaatgctagttatacccttaacctgactctacattcaaacgagtcc
ttaactgaactgggcaaacaggccgtgcagagaagcttaaagattctaaatgaaagtgca
gatttggttaactgcactgaagggcttgtgctgaacgtcagtgctgtgaatagcaagctc
agtgtagtcagagcgagtatgcacaacttctcccagcttcttcctgaggctctgatcaac
ctggcgagcctgcccagtggaaatagagagcagtttctggaggcaaagcagcaagcagcc
aaagccaatgcctcattacagaaagctctagagcatttggacaactaccgcataaagcta
gaggcatcatcttcagctgtgagctcagccaacagcagcgccagcactgttaacgcaatg
gttaaagactctgaggatactgccagtgcagctgaatctaagctaaaagaggctcagttg
cggacagagagactctttgacaggttgcaacctctgaagttgctgggggagaacttgagc
aggaacctgtccgagataaaggagatgatcaaccaggcccgaaagcaagcagcctcgatc
aaagttgcagtgtcagcagaccgggattgtgtgcgtgcatacaaaccagaaatcacctcc
agcaatttcaacacactcacccttacagtgaaaactgctgaaccagacaacctgctcttc
tacatgggcagcagctccagtgtggatttcatggctcttgagatgaggcatggaaaagtg
gcctttctatgggattcaggctcaggtcttactaaactggagtaccccaacttgcagata
aacaacaacaaatggcacagaattaatgccactcgatttggaaggcaaggctccctcact
gttcagcagttggactcagagccgatgccttcagtaaagaccacagcaccaggtccatcc
acaatcatggaagtcaacaagtccacatgggtgtttgtaggaggcctgggtggacagatt
aagaaatctccagcagtgaagatgactcactttacaggatgtattggtgaagcatctctg
aatgagaaaaacattgggctctggaactatgctgaaagggaaggaggctgtggtggttgc
ttcatgaggccgcagacagaggagacctctttctactttgacggcagtggatattcagtg
gtagagaagtctctgcgccccatatccacaagcatcgtcatgttcttcaaaactctctca
cctaacggcctgctgctctatctggcttccaatggcactagagacttcttgtccattgaa
ttggtggaaggcaaagtgcacctgacctttgaactgggctctggaccactcacattaacc
tccacaaaagcatacaatacgggattgtggtacaagattgccctgcaacgcaacaaacgc
aaaggctatttatccataatgactgctgacaccccgtcagagagagaggtcatggaggca
gagtctcccggaactgcctctgatctcaaccgctcagatctggaccctatctacattggt
gggctgcctacgtcgaggccaatcaggaggcaggttattgcacgctcatatgtgggatgc
attaagaatgtcgaaattgcacgtacaaactttgacctactgagagatgcctatggtgta
aagaaaggctgtatcctaaagcctatccgcagtgtgtctgtgctgggtgggggatatgtg
cagatgcctgaagtcactgttggtcctcagagcgagctcatgagtagcttctccagcaga
aacagcagtggcctcatcctggcaggattcagctcaaccggcggccacaaacgcagacac
acacagcagcctttcctggctgtgatgctggtgtcaggcagagtagaagtccacgtgagc
atggcagagggaggaggcatgcacaaagctgttgtcaaatcccaaaatggcacattcagt
gatggacaggagcactcactcatcctgcagagaaacaaaaggacattgacagtgtatgtg
gatgaggaccagcaggaaacagtaagactgggtttaactgcagagaaagttcttactctg
agtaatttctacattggaggcattccaccaggagaggccactggagcgctcgtttccacc
acatcgttctacggctgcatcaggaacatggctgtggacaccatgctgttggacctgtca
ggggctgtgaagtatgagggagtggatatggacagctgcctgctggaggagcgtcctaaa
cgcctgcttctgccagatgagggcgacgtggagccagagcccactgctggcccggaccag
gggcccctgtcacctcccagtgaactcagtgctgttacaccaggagccaccacttgcact
gccatggacaacacaggaagtatcccggatgcataccagcttggactctccaaaaacagt
cacattatgttcggcttcaagaataaaacagtcaggtcgagttttacaattgagctgtcg
atccgtacgctggctcacagtgggatcctgtactacatggctaatgctaatcagcaggat
tatgcagtgctgcagctgctgggaggtcggctgctgttctcttgtgacctgggcaaagga
cctgccatcaccacatcgcacacacacatcagtgatggacagtggcacactgtgaggacc
gacttcagtaagaagagcatactgatcagtgttgatggagccgagtcggagcgaacagcc
attaaaggacaaagtctggatgtggaagggaagctctacgtgggcggattgccgacagga
tatacagccaagaggattggaaacgtgacccacagcgtggccggctgcgtgcagaaggtc
aagctgaacaatgcagaactgaacttgcacaatgcagctgcatctcacgacaccggctcc
tgcttcagctcagtgcaggatggcaccttcttcaacggctcaggatacgccgctttcatg
aaagagggttattacgtgggctctgatgtgacggtgagcttggagtttcgttccacggcg
ctggacggggttctgctgggagtgagcagcgccagagtggacgccattggactggagctc
ctcaatggacaggtggtgttcaatgtgaataacggtgctggacgcttctcggccgtgtcc
aggagcaggtcattgctgtgcgacggccgctggcacactctggtggccaagaagctgaag
cacagcctgagtctgactgtagacggagtgaccgtgagcgcagagaacccacactcttcc
tctacctcagccgagaccaagaaccccatctacgttggaggatatccagctaacgtgaag
cagagctgtctgagtgccagaacatctttccggggctgcatgaggaacctgcgcctctcc
aaaggtcatattatcgacgtcttagagttcagcttggccttcactcggcccggtgtctct
cctcactcctgtcccgccgctacagctgcctga
DBGET
integrated database retrieval system
