Pangasianodon hypophthalmus (striped catfish): 113527417
Help
Entry
113527417 CDS
T05759
Symbol
dhx8
Name
(RefSeq) ATP-dependent RNA helicase DHX8
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113527417 (dhx8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
phyp03041
]
113527417 (dhx8)
Enzymes [BR:
phyp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
113527417 (dhx8)
Spliceosome [BR:
phyp03041
]
Complex C
Other components
Step II factors
113527417 (dhx8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
Helicase_C
WHD_HA2
DEAD
AAA_22
GIPC1_GH2
AAA_19
nSTAND3
AAA_16
T2SSE
PhoH
TsaE
Sigma54_activ_2
nSTAND_NTPase5
Flavi_DEAD
Motif
Other DBs
NCBI-GeneID:
113527417
NCBI-ProteinID:
XP_026771010
LinkDB
All DBs
Position
Unknown
AA seq
1203 aa
AA seq
DB search
MADLGEDELKKLEFLSLVSKVCTELDNHLGISDKDLAEFVINLAEKNPTFDSFKSELIKN
GAEFTDSLISNLLRLIQTMRPPTKASTSKGSEPVVKPKSEKDRLKEMFPALCRADNPNTR
TMLDEDDVKVAADAMKELEMFMPSAKATDSKSSKQRSEASSSKKSRRSRSRSRSRDRDRD
RDRRRRHRSRSRSRSRSRSPDKERRKRRSRWHSRSRSRSPGRGDREKGSDRWRDKHVDRP
PPEEPAVGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSKGQ
RVKVKVLSFTGSKTSLSMKDVDQETGEDLNPNRRRNVGGEGQEESAMRNPDRPTNLNLGH
APEVEDDTLERKRLTKISDPEKWEIKQMIAANVLSKEEFPDFDEETGILPKVDDEEDEDL
EIELVEEEPPFLRGHTKQSMDMSPVKIVKNPDGSLSQAAMMQSALAKERREVKQAQREAE
MDSIPMGLNKHWVDPLPDAEGRQIAANMRGIGMMPNDIPEWKKHAFGGNKASYGKKTQLS
IIEQRESLPIYKLKEQLIQAVHDNQILIVIGETGSGKTTQITQYLAEAGYTARGKIGCTQ
PRRVAAMSVAKRVSEEYGCCLGQEVGYTIRFEDCTSPDTVIKYMTDGMLLRECLIDPDLG
QYAIIMLDEAHERTIHTDVLFGLLKKTVQKRTDMKLIVTSATLDAVKFSQYFYEAPIFTI
PGRTYPVEVLYTKEPETDYLDASLITVMQIHLTEPPGDILVFLTGQEEIDTACEILYERM
KSLGPDVPELIILPVYSALPSEMQTRIFDPAPPGSRKVVIATNIAETSLTIDGIYYVVDP
GFVKQKVYNSKTGIDQLVVTPISQAQAKQRAGRAGRTGPGKCYRLYTERAYRDEMLTTNV
PEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPMETLITAMEQLYTLGALDDEGLLTRLG
RRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQNVFYRPKDKQALADQKKAKFHQ
PEGDHLTLLAVYNSWKNNKFSNPWCYENFIQARSLRRAQDIRKQMLGIMDRHKLDVVSCG
KATVRVQKAICSGFFRNAAKKDPQEGYRTLIDQQVVYIHPSSALFNRQPEWVVYHELVLT
TKEYMREVTTIDPRWLVEFAPAFFKVSDPTRLSKQKKQQRLEPLYNRYEEPNAWRISRAF
RRR
NT seq
3612 nt
NT seq
+upstream
nt +downstream
nt
atggccgacctcggtgaagatgagctcaaaaagctcgagtttttgtctttagtgtctaaa
gtttgtactgagcttgataaccacttgggaatcagcgacaaggaccttgctgagtttgtc
atcaaccttgcagaaaagaacccaacatttgatagttttaagtcagagctgatcaaaaat
ggagcagagtttacagactcactcattagcaatttactccgtctcattcaaacaatgcga
ccacccactaaagcatccaccagtaaagggagcgagcctgttgtcaagccgaagagtgaa
aaagaccggttaaaggagatgtttcctgccttgtgcagagctgataatcccaacaccaga
accatgctagatgaagacgatgtaaaggttgcagctgatgctatgaaagagctggagatg
ttcatgcccagtgccaaggccacagactctaagagcagcaaacagagatctgaagccagc
agcagcaagaagagtcgaagaagcaggagccgcagccggagtcgggacagagacagagac
agagacaggaggagacgccaccgctctcgttctcgctcgcgctccagatctcgctcccct
gacaaggagaggaggaagcgcaggagtcgctggcattcccgcagcagatccaggagtcca
ggccgaggggacagagagaaaggctcagaccgctggagggacaaacatgtggaccggccg
cctccagaggagcctgctgtgggtgacatctacaatggcaaagtcaccagcatcatgcag
ttcggttgctttgtgcagcttgaagggttgaggaaacgttgggagggcttggttcatatc
tctgagctcagaagagagggcagagtggcaaatgtggcagatgtggtcagcaaaggtcag
agggtgaaggtcaaggtgttgtctttcacaggctctaagaccagcctgagcatgaaggat
gttgaccaggaaacgggtgaggacttaaatcccaacagaaggaggaatgttggtggcgag
ggtcaggaggagtcagccatgaggaatccagacagacccaccaacctcaacctgggtcac
gctcctgaagtggaggatgacacgctagaacgcaagagactgaccaagatctctgatcct
gagaagtgggagatcaaacaaatgattgctgccaatgtgctgtccaaagaggaatttcca
gactttgatgaggagactgggatcctgcctaaagtagatgatgaagaggatgaggacctg
gagattgaactggtggaagaggagccacctttcctgagaggacacaccaaacagagcatg
gatatgagccctgtgaaaatagtgaagaaccctgatggctcactgtctcaggcagccatg
atgcagagcgctctggctaaagagagacgggaagtgaagcaggctcagcgtgaggctgag
atggactccattcctatgggcctcaacaagcactgggtggaccctctacctgatgctgaa
ggcaggcagatcgccgctaacatgcggggcattggcatgatgcccaacgacatcccagag
tggaagaagcacgcttttggtggcaacaaggcctcatacggaaagaagacgcagctgtcc
attatcgagcagcgagagagtctgcccatttacaagctcaaagagcagctcattcaggct
gttcatgacaaccagatcctgattgtgattggagagacaggctcagggaagaccacacag
atcactcagtacctggctgaggctggatacacagcacgtgggaagattggctgcacacag
cccagaagagtggctgccatgtctgtggctaagagagtgtccgaagaatatggttgttgt
ttgggacaggaggtgggttacactatccgttttgaggactgcacgagtccagacacagtc
atcaagtacatgacagacggtatgctgctgagagagtgtctgattgaccctgatctgggc
cagtatgctatcattatgctggacgaggctcacgagaggaccattcacaccgacgtgctt
ttcggcctgctcaagaagactgtacagaaacgcacagacatgaagctgattgtgacgtct
gctacactggacgctgtgaagttctcccagtatttctacgaggcccccattttcaccatc
ccaggtcgtacttatccagtagaggtgctgtacactaaagagcctgagacagattacctg
gatgccagtctgatcacagtcatgcagatccacctcactgagccaccaggtgatattctg
gtgttcttgacgggtcaagaagagatcgacacagcctgtgagatcctgtatgagcgaatg
aaatcactaggccctgatgtgccagagctgatcatcctgcctgtgtactctgcactgccc
agtgagatgcagaccaggatctttgacccagctccacctggcagcagaaaggtggtcatt
gcaacaaacattgctgagacttctctgaccattgatggaatctactacgtagtggatcca
ggttttgtcaagcagaaggtgtacaactcaaaaaccggcattgaccagcttgtggtgacg
cccatctctcaggcccaggctaagcagcgagcaggccgagcaggaaggacagggcctggc
aagtgctacagactgtacacagaacgtgcatatagagatgagatgctcaccaccaatgtg
cctgagatccagagaactaacctggccagcactgtgctctcccttaaggctatgggcatt
aatgacctgttatcatttgacttcatggacgcgcctcctatggagacgctgatcacagca
atggaacagctgtacacgttaggagctctggatgatgagggattactcactcgtctcgga
cgcaggatggctgagtttcctctagagcccatgctgtgtaagatgctcatcatgtctgtc
cacctgggctgcagtgaagagatgctcaccatagtgtccatgctctctgtgcagaacgtc
ttctataggccaaaggacaaacaggctctagctgaccagaagaaggctaagttccaccag
cctgagggagaccacctcactttactggctgtgtacaactcttggaagaacaacaagttc
tccaatccctggtgctatgagaacttcatccaggctcgctcattacgccgtgcacaggat
atccgcaagcagatgctgggcatcatggaccgacacaagttggatgtggtatcatgtggt
aaggccacagtacgtgtgcagaaggcaatctgcagtggtttctttcgtaacgctgctaag
aaagaccctcaggaaggctacaggacactcatagaccagcaggtggtttacattcatccc
tcgagtgccctcttcaaccgacaacctgagtgggttgtataccatgaactggtgttgacc
accaaagagtacatgcgagaggtgacgacaatcgacccacgttggctggtggagttcgct
ccggccttcttcaaagtatccgacccgactcgcctcagcaagcagaagaaacagcagcgt
cttgagcccctctacaaccgttacgaagagcccaatgcctggagaatttccagagctttc
cgcagacgctag
DBGET
integrated database retrieval system
