Pangasianodon hypophthalmus (striped catfish): 113527579
Help
Entry
113527579 CDS
T05759
Symbol
cdrt1
Name
(RefSeq) CMT1A duplicated region transcript 1 protein
KO
K10266
F-box and WD-40 domain protein 10
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
phyp04121
]
113527579 (cdrt1)
Ubiquitin system [BR:
phyp04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
113527579 (cdrt1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_WDHD1_1st
WDR55
Beta-prop_TEP1_2nd
WD40_CDC20-Fz
EIF3I
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_TEP1_C
Beta-prop_SCAP
Beta-prop_DCAF4
Beta-prop_WDR90_POC16_2nd
Beta-prop_Nup120_160
WD40_2
Beta-prop_CAF1B_HIR1
Beta-prop_SPT8
Beta-prop_IP5PC_F
Beta-prop_IFT140_1st
WDR90_beta-prop_4th
Beta-prop_VPS8
Beta-prop_RIG_2nd
Beta-prop_NWD2_C
F-box-like
Beta-prop_LRRK2
Beta-prop_RSE1_2nd
NBCH_WD40
Motif
Other DBs
NCBI-GeneID:
113527579
NCBI-ProteinID:
XP_026771329
LinkDB
All DBs
Position
Unknown
AA seq
954 aa
AA seq
DB search
MCVEMQRERRREESSCLSCKAEKSGELNTSPDCCHYTTKLYNSTQWLTGAGESARRRFLT
GVLVRCESLEILQKVQKVLQVTMGKDFTYTRSRVKAGDMAAVSSSNSAPDAALLGKEMLN
TWEWFKNSPSLTKTSYLLGLLAFCDAELLHMLGNLARVLVAREKRNLNFLRCNTAKDSSW
KEVKEVMLRGQRLESSDADWDDVEDPALMVVPRSSKSMSGVSQHRDFIRALPVGLAKRIL
GLLDKATLQSCKHVSQHWQYLTEEIIAEHSVKKMVEDQAVILQGTPSAVNPVYARIREVL
VPIGKEEVYIQPKKSFLKNKDIRGFESVYTMIKTKVVEMEERNVYCGVYNISIMLDREDP
SRVIHYGGGRMVALGSRDRSVRLLDTMLVKEVPPLMHGHAGSVRAVLVCEERELVISASY
DLSIRCWNLKTGACVMLFSGHMGTITCLDLHGNHLVSGARDCKVKVWSLQTGQCCDRMRF
RHRKAVVCVKTDSSLVLSGCEGGLIKMWDMETATLLKVTQGHQGSVKCLFFDQFHILSGG
SDGQVMAWSADYAFKTCLMTFQHPREVLTLSSLFLRVITGCVDGRIRIFSLLSGDCLRVI
KIGTDESPIRSLHTHHNTIVVNSSSRVLILQFADQQWDYNALSERKCMTDRTLPHPKHPA
SASSSTAKKNERRSRTPSLSQRMRSNSAPSMQHSHEKRYAPQKCVITLSERAVRERVRKR
GPHQPITTTKVLLKVRPSCQPECKDLATSNMELNAAVRDAWGPPPTRASSPPPALKPSKR
PHSAPKPSSFKGMLKIYTPLKTHTLDLNLQHSLHPSIPSPALIQTFPKSRRPQTACGVRQ
IGNSTNTTNTAQGDIQCSGNTFTRSELKHVGHHVDFEIPRKSRQSQNPLDPFRESGGFQL
RTDTQLEEYKQAQMQVNTYTLPKEEKKRQCRTSWKLKIKVAPIKALELGEETFT
NT seq
2865 nt
NT seq
+upstream
nt +downstream
nt
atgtgtgtggagatgcagagggagaggagaagagaggagagcagctgtttgagctgtaaa
gcagagaagagtggagagttaaacacaagtccagattgctgtcactacacaaccaaactg
tacaactcaacacaatggctgacaggagcaggagagagtgcaaggcggaggttcctcact
ggggtgttagtgcgctgtgagagtctggagatcctgcagaaggtgcagaaggtgctacag
gtgaccatggggaaagatttcacctacaccaggagtcgtgttaaagccggggacatggcg
gctgtctccagctcgaactccgctccggatgctgcattactcggaaaggaaatgttaaac
acctgggagtggtttaaaaacagcccgagcttgacaaaaacgagttatttactcggactc
ttggctttttgcgacgctgagctgttgcacatgctggggaacctggcgcgcgtgctggta
gcgcgagagaaacgcaatttaaacttcctgcggtgcaacacagccaaggattccagctgg
aaagaggtgaaggaagtaatgctcaggggtcagaggttggagagcagtgatgcagactgg
gatgacgtagaggatcctgcactcatggtggtccccaggtcttccaaatccatgtcagga
gtcagccaacaccgagactttattcgggcacttccagtcggtcttgccaagaggatttta
ggcctgttggataaggccacactacagagctgtaaacacgtctcccagcactggcaatac
ctaaccgaggagatcatagcagagcacagtgtgaaaaagatggtggaggaccaggctgtg
attttgcagggaaccccttctgcagtcaaccctgtctatgccaggatccgtgaggtccta
gtgcccattggaaaagaggaggtgtacatccagcctaagaagagtttcctaaaaaataag
gatatcagaggctttgagtcggtctataccatgattaaaaccaaggtcgtggagatggag
gagaggaatgtgtactgtggagtctacaacatttcaatcatgctggacagagaagacccc
agcagagtgatccattatggcggaggcaggatggtggcactgggctctagggaccgatct
gtgcgtctgctggacacgatgctggtgaaggaggttcccccgctgatgcacggccatgcg
ggcagtgtgagagctgtgctggtgtgtgaggagagagagctggtgatcagtgccagctac
gacctcagcatccgatgctggaacctgaagacaggtgcatgcgtgatgctgttctctgga
cacatgggcaccatcacctgcctggacctgcacggaaaccatctggtttccggagccaga
gactgcaaagtcaaagtgtggagcctgcagacgggtcagtgctgtgacaggatgaggttt
cgtcaccgtaaggctgtagtgtgtgtgaagaccgactcgtctctggtgctcagtggctgt
gagggaggattgatcaaaatgtgggacatggagacagcgactcttctaaaggtcacacaa
ggtcaccagggctctgtgaagtgcctgttctttgaccagtttcacatcttgtctggagga
tcagacggtcaggtgatggcctggagcgccgactatgcattcaaaacatgtcttatgacc
ttccaacatccacgggaagtgctaacgttgtcgtccctcttcctgcgagtcatcaccggc
tgtgtggatggaaggatccggatcttcagcttgctcagtggagattgtctcagagtcatc
aaaattggcacagatgaaagccctatacgttctttacacacacatcataatactatcgtg
gtgaacagcagtagtcgtgttttgattctgcagtttgctgatcagcagtgggattacaat
gcgctgtcggagcggaagtgcatgactgatcgcactcttcctcatcctaagcacccggct
tcagcaagctcatctacagcaaagaagaatgagaggagatccagaacaccatctctctcc
caacggatgaggagcaactcagctcccagcatgcaacactcacacgaaaagcgatacgcg
ccccagaagtgtgtgataaccctgagtgagagagctgtgcgagagcgtgtgaggaagaga
ggcccccatcagcccatcacaaccaccaaggttctcctaaaggtccgtcctagctgtcag
cctgagtgcaaagacctggccacctccaacatggagctgaacgctgcggtacgagatgcc
tggggtcctcctccaaccagagcgtcatctcctcctccagctctgaagccttctaaacgg
ccacattcagcccctaaaccgtcctcatttaaaggcatgcttaaaatatacacacctctg
aaaacccacacgctggacctcaacctccagcattccctgcatcccagcatcccatctccg
gcgttaatccagacttttcctaaatccagacgaccccagacggcttgcggtgtgcgacaa
atcggcaactccaccaacaccaccaacaccgcccagggagatatccagtgttctggaaat
accttcacgaggagtgagttgaagcacgtgggacaccatgttgattttgaaattccaaga
aaatccaggcaatcccagaatccactggatccattccgagagagtggaggatttcagctc
aggacagacacgcagctggaggaatacaagcaggcgcagatgcaggttaacacttacaca
ctcccaaaggaagagaagaagaggcagtgcaggacatcctggaaactgaaaattaaagtt
gctcccattaaagctctggagctgggtgaggaaacattcacctaa
DBGET
integrated database retrieval system
