KEGG   Pangasianodon hypophthalmus (striped catfish): 113527665
Entry
113527665         CDS       T05759                                 
Name
(RefSeq) histone-binding protein RBBP7 isoform X1
  KO
K10752  histone-binding protein RBBP4
Organism
phyp  Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp03082  ATP-dependent chromatin remodeling
phyp03083  Polycomb repressive complex
phyp04218  Cellular senescence
Brite
KEGG Orthology (KO) [BR:phyp00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    113527665
   03083 Polycomb repressive complex
    113527665
 09140 Cellular Processes
  09143 Cell growth and death
   04218 Cellular senescence
    113527665
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:phyp03036]
    113527665
Chromosome and associated proteins [BR:phyp03036]
 Eukaryotic type
  Nucleosome assembly factors
   Histone chaperones
    CAF-1
     113527665
  Histone modification proteins
   HAT complexes
    HATB complex
     113527665
   HDAC complexes
    Sin3A-HDAC complex
     113527665
   Polycomb repressive complex (PRC) and associated proteins
    PRC2.1
     113527665
    PRC2.2
     113527665
  Centromeric chromatin formation proteins
   Kinetochore proteins
    MIS16-MIS18 complex
     113527665
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    113527665
  Chromatin remodeling factors
   NuRD complex
    113527665
   NuRF complex
    113527665
   NuRF complex (fruit fly)
    113527665
SSDB
Motif
Pfam: WD40 CAF1C_H4-bd WD40_CDC20-Fz WD40_Prp19 Beta-prop_CAF1B_HIR1 Beta-prop_RIG_2nd Beta-prop_EIPR1 Beta-prop_TEP1_2nd WDR55 Beta-prop_EML_2 WD40_WDHD1_1st Beta-prop_WDR75_1st Beta-prop_EML EIF3I WD40_MABP1-WDR62_2nd WD_LRWD1 Beta-prop_WDR19_1st Beta-prop_WDR90_POC16_2nd Beta-prop_DCAF12 WD40_RFWD3 ANAPC4_WD40 Beta-prop_RIG_1st eIF2A WD40_MABP1-WDR62_1st Beta-prop_SPT8 Beta-prop_IFT140_1st NBCH_WD40 MIOS_WD40 Beta-prop_IFT122_1st Beta-prop_WDR35_TULP_N Beta-prop_DCAF4
Other DBs
NCBI-GeneID: 113527665
NCBI-ProteinID: XP_026771488
LinkDB
Position
Unknown
AA seq 426 aa
MADKEVYDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTVQWLPDVSRPEGKDY
AIHRLVLGTHTSDEQNHLVIASVQIPNDDAQFDASHYDSEKGAEFGGFGSVSGKIEIEIK
INHEGEVNRARYMPQNPCIIATKTPTSDVLVFDYTKHPSKPDPSGECSPDLRLRGHQKEG
YGLSWNPNLSGNLLSASDDHTICLWDISGSPKEGKIVDAKTIFTGHTAVVEDVSWHLLHE
SLFGSVADDQKLMIWDTRSNNTAKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVAL
WDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAE
DGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIYNDEETDTPASE
LESQAS
NT seq 1281 nt   +upstreamnt  +downstreamnt
atggcagacaaagaagtgtatgatgatgctgtagaggagcgggtaataaatgaagaatac
aaaatatggaagaaaaacacgccttttctctacgacctggtcatgacacatgccctcgaa
tggccaagtctaacggtgcagtggttgcctgatgtgagcagaccggagggaaaggattat
gcaattcacagactggtgctgggaacacacacttcagatgagcagaaccatctggtcatt
gccagtgttcagatccccaacgacgacgctcagtttgatgcttctcactacgacagtgaa
aaaggagcagagtttggaggctttgggtctgtgagcggaaagattgagatcgagataaag
atcaatcatgagggtgaggtgaaccgggcgaggtacatgccacagaacccctgcataatc
gccacgaagactcctacatctgatgtgctagtctttgactacactaaacacccatccaaa
ccagaccccagcggtgagtgcagtccagacctgagactcagagggcatcagaaggagggc
tatggtctttcctggaaccccaacctgagtggaaacctgctcagtgcatcagatgatcac
acgatctgtctatgggacatcagtggatctcctaaggaaggaaagattgtagatgccaag
accatcttcacaggccacactgccgtagtggaggacgtgtcctggcaccttctgcatgag
tcgcttttcggctcagtggctgatgaccagaaacttatgatctgggacacaaggtccaac
aacacagctaagcccagtcactcagtggatgctcacactgctgaagtcaactgcttgtcc
ttcaatccctacagcgagttcatcctagccaccgggtctgcagataagactgtggccctg
tgggatctgcgcaacctgaagctgaagctccactctttcgagtcacacaaggatgaaata
ttccaggttcagtggtctcctcataacgagacgatcctggcctccagtggaacagacagg
cgactcaacgtctgggacctgagtaaaattggagaggaacagtctgctgaggatgcggaa
gatggacctccagaactgctgtttattcacggcggccacacagcgaagatctctgatttc
tcatggaatcccaatgagccctgggtgatctgctctgtctctgaagataacattatgcaa
gtttggcaaatggctgaaaacatctacaatgacgaagagacagacactcctgcctcagag
ctcgaaagccaggcctcataa

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