Pangasianodon hypophthalmus (striped catfish): 113527720
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Entry
113527720 CDS
T05759
Name
(RefSeq) transcription factor Sox-9-A-like
KO
K18435
transcription factor SOX9 (SOX group E)
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
phyp03000
]
113527720
Transcription factors [BR:
phyp03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
113527720
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HMG_box
Sox_N
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
113527720
NCBI-ProteinID:
XP_026771601
LinkDB
All DBs
Position
Unknown
AA seq
456 aa
AA seq
DB search
MNLLDPYLKMTDEQEKGLSDAPSPSMSEDSAGSPCPSASGSGSCSDVESAGGRARDSGGE
LKKDVDDEHENNEKFPQCIREAVSQVLKGYDWTLVPVPVRVHGASKNKPHVKRPMNAFMV
WAQAARRKLADQYPHLHNAELSKTLGKLWRLLNDVEKRPFVEEAERLRVQHKKDHPDYKY
QPRRRKSAKNGQGEGEEGAEHTHVSTNAIFKALQQADSPASSMGEVHSPSEQSGQSQGPP
TPPTTPKIDAQAGKSEPKREGRPLQDGIGVTVGSGGQRQLNIDFRDVDLGELSSDVISHM
ESFDVAEFDQYLPPNGHPGHGWMGSAGTGWMAKSPSSSPQVGAASPGEDQSQQRTAHIKT
EQLSPSHYGSFNLQHYTTSTSSSAFPSCISRPQYDYTDQQGGATSYYSTGQSSIYSTFNY
MSPSQRPMYTPITETQSGHSPQHWDQQPVYTQLSRP
NT seq
1371 nt
NT seq
+upstream
nt +downstream
nt
atgaatctcctcgacccctacctcaagatgacggacgagcaagagaagggcctatcggac
gcaccgagtccgagcatgtccgaggattcggcggggtctccgtgtccgtctgcctccggc
tcgggctcgtgctcggacgtggagagcgccggtgggcgcgcgcgcgacagcggcggcgag
ctgaaaaaggacgtggacgacgagcacgagaacaacgagaagttcccgcagtgcatccgc
gaggccgtgtcgcaggtgctcaagggctacgactggacgctcgtgcccgtaccggtgcgc
gtgcacggcgccagcaaaaacaagccgcacgtgaaaaggcccatgaacgcgttcatggtg
tgggcgcaggccgcgcgccgcaaactcgcagatcagtatcctcatctgcacaacgccgag
ctgagcaagaccctgggcaagttatggagattgctgaacgacgtggagaagcgtccattc
gtggaagaggctgagcgcctgcgtgtgcaacacaagaaggatcaccctgactacaagtac
cagccacggcgaaggaaatcagccaagaatggtcagggcgagggggaagagggtgcggag
cacacacacgtctccaccaacgccatcttcaaggccctgcagcaggccgactctccagca
tccagcatgggagaggtgcactcccccagcgagcagtcaggccagtcccagggtcccccg
actccgcccaccacccccaaaattgacgctcaggcaggcaaaagtgagccaaagcgcgag
ggccgcccgctccaggatggcatcggagttactgttggctctggcgggcagcgtcagctt
aacatcgacttccgcgacgtggacctgggtgaactgagcagcgacgtcatctcacacatg
gagagctttgacgtggccgaatttgaccagtacctgccacctaacgggcaccccgggcat
ggctggatgggttcagcgggcaccggttggatggccaagagcccgagctccagccctcag
gtgggtgctgccagccctggtgaggatcagagccagcagaggacagcgcacatcaaaacc
gagcagctgagtcccagccattacggctcctttaacctgcagcactacaccacttccact
tcatcctctgccttcccatcatgcatcagccggccgcagtacgactacaccgaccagcaa
ggcggcgcgacgtcctattactcaacaggccagagctcgatttattccacctttaactac
atgagtcccagccagaggcccatgtacacccccatcaccgagacccaatcaggccacagc
ccccagcactgggaccagcagcctgtctacacacagctctccagaccctga
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