Pangasianodon hypophthalmus (striped catfish): 113527804
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Entry
113527804 CDS
T05759
Symbol
msh2
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
113527804 (msh2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
phyp03400
]
113527804 (msh2)
DNA repair and recombination proteins [BR:
phyp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
113527804 (msh2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_I
MutS_II
AAA_27
Motif
Other DBs
NCBI-GeneID:
113527804
NCBI-ProteinID:
XP_026771781
LinkDB
All DBs
Position
Unknown
AA seq
938 aa
AA seq
DB search
MAVQPKQNLSMDSASETGFLNFYFSMPEKPDTTVRIFDRSDYYTVHGKDASFAAKEVFKT
NGVIKMLGAGSRRLESVVLSKMNFEAFVRDLLLVRQYRVEVYRNKAGGKSSKDHDWQIAY
KASPGNLTQFEEVLFGSGGGLGEGAAGVVGIRVGTGSDGQRVVGVGYVDSILRKLGVCEF
PDNDQFSNLEALLVQIGPKECVLPAGDTAGDLGKLRQVVQRGGILLSDRKKAEFTTKDIV
QDLNRLLKARKGETVSSAALPEMEKQIAMSCLAGVIKYLELLSDEANFTSFKMTTFDLSQ
YMRLDNAAVQALNLFQASSDDPTGTHSVAGLLNKCRTPQGQRLVNQWLKQPLMDKNKIEE
RLDLVESFVEDSELRQSCQEDLLRRLPDMNRLAKKFQRQNANLQDCYRVYQAVGQLPALV
LALERHAGKHQVLLNAAFITPLNDLISDFSKFQEMIETTLDMNQIEHHEFLVKPSFDPTL
SELRESMDQLEKSMQAALNSAARELSLEAGKTIKLESNAQVGYFFRVTCKEEKSLRNNKK
FTTLDVQKNGVRFTNSKLSSLNEEYTKNREEYEEAQNAIVKEIISIGAGYVDPLQTLNDV
VAQLDAVVSFAVVSHAAPVPYVRPTILEKGTGRLVLKGARHPCVEAQDDVAFIPNDVTFT
KGKEMFHIITGPNMGGKSTYIRQVGVIVLMAQVGCFVPCDEAEVSVVDSVLARVGAGDSQ
IKGVSTFMAEMLETAAILRSATENSLIIIDELGRGTSTYDGFGLAWAISEYIATRLKSFC
LFATHFHELTALAQQVSTVNNLHVTALTTDNTLTMLYRVKTGVCDQSFGIHVAELANFPK
HVIAYAREKALELEEFQDISTVDEDAGPEAKKRCMEKKDGEKIIEEFLRKVKALPVEDMT
DEAIKAELRKLKAEVVAQNNAFVNDIVSRTEKAKTTLA
NT seq
2817 nt
NT seq
+upstream
nt +downstream
nt
atggccgtgcaaccaaaacagaacttgtccatggacagtgcgtccgaaactgggtttcta
aacttttatttttccatgccagaaaaacccgacactacggtgaggatattcgatcgcagc
gactactacaccgtgcacggaaaagatgctagctttgctgcaaaagaagtcttcaagacg
aatggagttattaaaatgctcggtgcaggcagcaggaggctggagagtgtggtgcttagt
aagatgaacttcgaggcgtttgtgagagacctgctgctggtcaggcagtaccgtgtggaa
gtgtacaggaataaggcaggaggcaagagcagcaaagatcacgactggcaaatagcctac
aaggcctctccaggaaacctgacccagtttgaggaggttctgtttggcagtggaggaggt
ttaggggaaggggctgctggagtggtggggatccgtgttggaacagggagtgatggacag
cgtgtcgtgggtgttggatatgttgatagcatactccgaaagcttggtgtctgcgagttt
ccagataacgaccagttctccaatctggaagctctcctggtgcagatcggccccaaagag
tgtgtgcttcctgccggagatacagcgggagatctgggtaaactaagacaggtggtgcag
cgtggaggcattctgctctcagacaggaagaaggcagagtttacaaccaaagacatagtt
caggatctgaaccgtttactgaaggctcgcaagggagagacggtgtctagtgctgcactc
ccagagatggagaaacagattgctatgtcctgtttggctggtgtcataaagtatctggag
cttctttctgatgaggccaactttacttctttcaaaatgaccacatttgacctcagccag
tacatgcggctcgacaacgctgctgtgcaggcgcttaacctcttccaggcttcctctgat
gatccaacaggtacacactccgtagcaggacttttgaacaagtgtcgaacacctcagggc
caacgactggtcaaccagtggcttaaacagcctctgatggacaaaaacaagattgaggaa
aggcttgaccttgtggagagttttgtggaggactcggagctaagacagagctgccaggag
gacctgctgcgtcggttgcctgacatgaatcgcctggctaaaaaatttcagcggcaaaac
gccaacctgcaggactgttatcgtgtgtatcaggctgtgggtcagctgccggcgctggtg
ctggccctggagagacatgctggcaaacatcaagtcctgctgaatgcagcgttcattaca
cccctcaatgacctcatctctgacttctccaagtttcaggagatgattgaaactacactg
gacatgaaccagattgagcaccatgaatttctggtaaaaccctcctttgaccccacactg
agtgaactgagggagagcatggaccagctggagaagagcatgcaggcagctctaaacagt
gcagcccgagagcttagtctggaggcaggcaagacgataaagctggaatccaacgcacag
gtaggatacttcttccgtgtcacctgcaaagaggagaaaagcctgcgcaacaataagaaa
ttcacgaccttggatgtgcagaagaacggagtgcgcttcaccaacagtaagctgagctct
ttgaatgaagagtacaccaaaaacagggaagagtatgaggaggctcagaacgccattgta
aaggagatcatcagcatcggtgctggttatgtagacccactgcagacattgaatgatgtg
gtagcacagctagatgcagtggtgagctttgcagtcgtatcccatgcggcccctgtgccc
tatgtgaggcctaccatactggagaagggtaccggcaggttagtcctgaagggagcacgt
catccttgtgtggaagcccaggacgatgtggccttcatccccaatgatgtgaccttcact
aaaggaaaggagatgttccacatcattacaggtccaaatatgggtggcaaatccacctac
atccgtcaggtgggtgtgatcgtgctgatggcgcaggttggctgctttgtgccatgtgat
gaagcggaggtgagtgtggtggacagtgtgctggcccgtgttggtgcaggggacagccag
attaaaggagtgtccacatttatggctgagatgctcgagacagccgctatcttacgttct
gccactgagaactctctgatcatcattgatgaactgggaagagggacttccacatacgat
ggctttggcttggcttgggccatctctgagtacattgcaacacgcctgaagtccttctgc
ctatttgccactcacttccatgagctgaccgctttagcacagcaagtatctaccgtgaac
aacctccatgtcactgcactgaccacagacaacactctcaccatgctctacagggtgaaa
acaggtgtgtgtgaccagagctttgggattcacgtggctgagctggctaacttccccaaa
catgtcattgcgtatgctcgggaaaaggctttggagcttgaggagtttcaggatatctcc
acagttgacgaggatgctggacctgaagctaaaaagcgctgcatggagaaaaaggatggg
gagaagatcattgaggagttcctgagaaaggtgaaggctctgcctgtcgaggacatgact
gatgaggctatcaaagcggagctgcgcaaactgaaggctgaggtggtcgcccaaaacaat
gcctttgttaatgacatcgtttcacgtactgagaaagcgaaaactacattggcataa
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