Pangasianodon hypophthalmus (striped catfish): 113527853
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Entry
113527853 CDS
T05759
Name
(RefSeq) collagen alpha-1(II) chain isoform X1
KO
K19719
collagen type II alpha
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp04510
Focal adhesion
phyp04512
ECM-receptor interaction
phyp04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
113527853
04518 Integrin signaling
113527853
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
113527853
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
phyp00536
]
113527853
Glycosaminoglycan binding proteins [BR:
phyp00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
113527853
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
113527853
NCBI-ProteinID:
XP_026771792
LinkDB
All DBs
Position
Unknown
AA seq
1493 aa
AA seq
DB search
MFRFVDSRTVLLLVATQCILQAVVRCQREDDQEDLGGCIQDGQHFEDRAVWKPEACRVCV
CDSGSVLCDEVICEELRDCNNPIIPPGECCPICPADQDQTSETFGAKGQKGEPGDIANVL
GPRGPAGPMGPPGEQGPRGERGPKGEKGSPGPRGRDGEPGTPGNPGPPGPPGPPGPNPPG
LGGNFAAQMAGGFDEKAGGANMGVMQGPMGPMGPRGPPGPTGAPGPQGFQGSPGEAGEPG
PSGSMGPRGPPGPPGKSGSDGENGKPGKPGDRGPTGPQGARGFPGTPGLPGIKGHRGHPG
LDGAKGETGAAGAKGESGAPGENGAPGPMGPRGLPGERGRPGPSGAAGARGNDGLPGPAG
PPGPVGPAGAPGFPGAPGSKGEAGPTGARGAEGAQGPRGEAGTPGSPGPAGASGNPGTDG
IPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQSGDPGIPGFKGEAGPKGERG
VAGPQGAPGPIGEEGKRGPRGEPGSAGPLGPPGERGAPGNRGFPGQDGLPGAKGAPGDRG
VSGLSGPKGAVGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPTXXPGEDGRPGPPGPQG
ARGQPGVMGFPGPKGANGEPGKSGEKGLVGSPGLRGLPGKDGETGAAGPPGPAGPAGERG
EQGQPGPPGFQGLPGPGGPPGEAGKPGDQGVPGESGAPGVVGPRGERGFPGERGSAGPQG
LQGPRGLPGTPGTDGPKGAIGPAGTAGAQGPPGLQGMPGERGSAGISGPKGDRGDSGEKG
PEGAPGKDGARGLTGPIGPPGPSGPNGAKGETGAIGPTGPAGARGAPGDRGEVGPPGPAG
FAGPPGADGQPGLKGEQGESGQKGDAGSPGPQGPSGAPGPVGPTGVSGPKGARGAQGAPG
ATGFPGAAGRVGPPGPNGNPGPVGPAGPSGKDGPKGVRGDAGPPGRPGDAGLRGPPGTPG
EKGEPGEDGPPGPDGPTGPAGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGSGG
ERGPPGPVGPPGLTGPTGEPGREGNPGSDGPPGRDGSAGVKGERGNTGPIGAPGAPGAPG
SPGPVGPVGKQGDRGESGAQGPAGPPGPAGARGMAGPQGPRGDKGEAGEAGERGQKGHRG
FTGLQGLPGPPGSPGDQGAAGPSGPSGPKGPPGPVGPAGKDGANGIPGPIGPPGPRGRSG
ETGPAGPPGNPGPPGPPGPPGPGIDMSAFAGLGQTEKGPDPLRYMRADEASNNLRQHDVE
VDATLKSINGQIEDIRSPDGSRKNPARSCRDLKLCHPDWKSGDYWVDPNLGCTADAIKVF
CNMETGETCVKPTTSSIPRKNWWSTKSKGQKHVWFGENMGGGFHFSYGDMMPTPNVASIQ
MNFLRLLSSEASQSITYHCKNSVAYMDETTGNLKKALLLQGSNDVEIRAEGNSRFTYSVL
EDGCKKHTGQWGKTVIEYKTQKTSRLPIVDIAPLDIGGANQEFGVDIGPVCFL
NT seq
4482 nt
NT seq
+upstream
nt +downstream
nt
atgttcagatttgtggactcacggactgtcctgctacttgtagcgacacaatgtattttg
caagccgttgtcagatgtcaacgagaggatgaccaggaggacttaggcggctgcatccaa
gatggccaacatttcgaggaccgtgcagtgtggaagcctgaagcgtgtcgggtctgtgtg
tgtgactcggggtcagtgctgtgtgatgaggtcatctgcgaggagctgagggattgcaac
aatcccatcattccacctggagagtgctgccccatctgccctgctgaccaagaccagact
agcgagacctttggtgcaaagggacaaaaaggagaacctggcgatattgcaaatgttcta
ggaccgagaggaccggctggccccatgggaccacctggagagcagggaccacgtggagag
agaggccctaagggtgagaagggaagtccaggccccagaggaagagacggcgagcccggc
actccaggcaaccctggacctcccggacctcccggcccaccaggcccaaacccacctgga
cttggaggaaactttgcggctcagatggctggaggttttgatgagaaagcaggaggagct
aacatgggtgtgatgcaaggcccgatgggccccatgggtccccgtggtccccctggtccc
actggagcacctggcccacaagggttccaaggcagcccgggagaagctggcgaacctgga
ccttctggctctatgggacctcgtggcccacctggaccacctggaaaatctggaagtgat
ggtgagaatggcaaacctggtaagcctggtgaccgtggacccactggacctcagggagct
cgtggattccctggaacccctggacttcctggcatcaagggacacagaggacacccaggt
cttgatggcgccaagggagagactggagctgctggagctaagggtgagtcaggtgcacct
ggtgagaatggcgcccctggaccgatgggccctcgtggtcttcctggtgagagaggacgc
cctggaccctctggagctgctggtgcccgtggtaatgatggtcttcctgggcctgctggt
cctcctggtcctgttggtcctgctggtgccccaggtttcccaggagcccctggttctaag
ggtgaggccggacctactggtgctcgtggagctgagggagcccaaggaccccgtggagag
gctggcactccaggttctcctggacctgctggagcttctggtaaccctggtactgatggt
attcctggagctaaaggatctgctggtgcccctggtattgctggtgccccaggattccca
ggacctcgtggcccacctggacctcagggagctaccggacctcttgggcccaagggtcag
agtggagaccctggtatcccaggatttaagggagaggctggaccaaaaggagagaggggt
gttgcaggacctcagggtgccccaggcccaattggtgaagagggtaagagaggacctaga
ggagagcccggttctgctggccctcttggacctccaggagagagaggagctccaggtaac
cgtggattcccaggtcaagatggtcttcctggtgctaagggtgctcctggtgatcgtggt
gtttctggattgtctggaccaaaaggggctgttggagatcctggtcgtcctggcgagcct
ggtcttcctggggcaagaggtctcactggtcgccctggagatgctggaccccaaggaaaa
gttggcccaacnnnnnntcctggtgaggatggtcgtcctggtccccctgggcctcaggga
gctcgtggacagcctggcgtgatgggattccccggacccaagggagccaatggagagcct
ggcaaatctggagagaaaggacttgttggcagccctggtctcagaggtttgcctggtaaa
gatggggagactggagctgctggtcctcctggccctgctggacctgctggagagagaggt
gaacaaggacagcctggtcctcctggcttccagggtttgcctggacctggtggaccacca
ggagaggccggcaaaccaggtgaccagggtgttcctggagagagtggtgcccctggtgtg
gttggaccaagaggtgagcgtggtttccctggtgagagaggaagtgctggaccccagggt
cttcagggacccagaggacttcctggaactcctggaactgatggacccaagggtgccata
ggcccggctggtactgctggtgcccagggtcctcctggtctgcagggtatgccaggtgaa
agaggttctgctggtatctctggacctaagggtgacagaggtgactccggagagaaagga
cctgagggagctcctggcaaagatggtgcaagaggtttgactggccctattggtccacct
ggtccttctggtcccaatggagctaagggtgaaactggtgctattggcccaactggacct
gctggagctcgtggtgctcctggtgaccgtggtgaggttggacctcctggccctgctggt
tttgctggaccccctggtgctgatggccagcccggattgaaaggagaacagggagagtca
ggccagaaaggagatgctggatcccctggacctcaaggaccctctggagcacccggtcca
gttggcccaactggtgtctctggacctaaaggagcccgcggagcacagggagccccaggt
gctactggtttcccaggcgctgctggaagagttggaccacccggtcctaatggtaaccct
ggccctgttggtcctgctggtccttctggtaaagatggtcctaagggagtgcgtggtgat
gctggtccaccaggaagaccaggagatgctggactgcgtggacctcctggaacccctgga
gagaagggagagcctggagaggatggcccccctggtcctgatggtcctactggtcctgca
ggtttagctggtcagcgtggtattgttggtctgcctggtcagcgtggtgagagaggtttc
cctggccttccaggaccttctggtgagcctggcaaacagggtgctcctggttctggtggt
gaacgtggaccccctggccctgttggaccccctggactgactggacctactggagaacct
gggcgtgagggtaatcctggatctgatggtcctcctggccgagatggttctgctggtgtg
aagggtgaacgtggtaacactggtcctattggtgctcctggtgctcctggtgcccctggt
tctcctggtcccgttggtcctgtaggcaaacagggagacagaggagagagtggagcacaa
ggacctgctggacctcctggacctgctggagcaagaggcatggctggaccccaaggtcct
cgtggagacaagggagaggctggtgaagctggagaaagaggacagaagggacacagagga
ttcactggtctgcagggtcttcctggacctcctggttctcctggtgaccagggtgctgct
ggacctagtggacctagtggacctaagggaccccctggacctgttggtccagctggaaag
gatggcgcgaatggtatccctggacccattggaccccctggaccacgtggacgctctgga
gaaactggcccagctggtcctcctggtaaccctggaccccctggtcctcctggtcctcca
ggccctggcattgatatgtctgccttcgctgggttgggtcagactgagaagggccccgat
cccctgcgttacatgcgtgctgatgaggcctccaacaatctgagacagcatgatgtggag
gttgatgccaccctgaaatccattaacggccagattgaggatatccgcagccctgatgga
tctcgcaagaaccctgctcgctcctgccgtgacctgaaactctgccaccctgattggaag
agcggtgactactgggtggatcctaaccttggctgcactgctgatgccatcaaggtcttc
tgcaacatggagactggagaaacatgtgtgaagcccactacaagcagtatcccacgcaag
aactggtggagcaccaagagcaagggtcagaagcacgtatggtttggcgagaacatgggt
ggtggcttccatttcagctatggtgatatgatgccaactccaaatgtggccagcattcag
atgaacttcctgagactgctatctagcgaggcctctcagagtatcacctaccactgcaag
aacagcgtggcctacatggatgagaccaccggcaacctgaagaaggctcttctgctgcag
ggctccaacgatgtggaaatcagagcagagggtaacagccgattcacatacagtgtgctg
gaggatggctgcaagaaacacacaggccagtggggtaagactgtgattgagtacaaaact
cagaagacatctagactgcccatcgtggacattgctcctttggacatcggtggagctaat
caggagtttggagtggacattggaccagtctgtttcttgtaa
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integrated database retrieval system
