Pangasianodon hypophthalmus (striped catfish): 113527875
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Entry
113527875 CDS
T05759
Symbol
pold1
Name
(RefSeq) DNA polymerase delta catalytic subunit
KO
K02327
DNA polymerase delta subunit 1 [EC:
2.7.7.7
]
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp03030
DNA replication
phyp03410
Base excision repair
phyp03420
Nucleotide excision repair
phyp03430
Mismatch repair
phyp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
113527875 (pold1)
03410 Base excision repair
113527875 (pold1)
03420 Nucleotide excision repair
113527875 (pold1)
03430 Mismatch repair
113527875 (pold1)
03440 Homologous recombination
113527875 (pold1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
phyp03032
]
113527875 (pold1)
03400 DNA repair and recombination proteins [BR:
phyp03400
]
113527875 (pold1)
Enzymes [BR:
phyp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
113527875 (pold1)
DNA replication proteins [BR:
phyp03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase delta complex
113527875 (pold1)
DNA repair and recombination proteins [BR:
phyp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DNA polymerase delta complex
113527875 (pold1)
MMR (mismatch excision repair)
DNA polymerase delta complex
113527875 (pold1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol_B
DNA_pol_B_exo1
zf-C4pol
POL3_N
REV3_N
DNA_pol_B_exo2
DNA_pol_B_2
Motif
Other DBs
NCBI-GeneID:
113527875
NCBI-ProteinID:
XP_026771819
LinkDB
All DBs
Position
Unknown
AA seq
1108 aa
AA seq
DB search
MDFKRRNGGPSMGGVSQAKRGKMGSEWEDGPSHFEEELALLDEMDMEMESGEGQAGHDVI
PVGDLYSADLNPRWRRPAAATLHPDKDTLIFQQIDLDYYLGVAVAGMPGQVQGKVPVVRM
FGVTDSGNSVCCHIHGFAPYFYVPAPAGFTSSHLAEFQKELNAAVLKDMRSNKDNISVTV
LAVDITRKESMYSYHGKRPLDFLRITMAMPRLVAPAKRILEQGFKFAHFSLQSYPAYEAN
IDFEIRFMVDCDVVGCCWIELPKGKYKLREEKSTGETDSRHPGKVSLCQYEVDVGWTDLI
SHPAEGDWQRIAPLRVLSFDIECAGRKGVFPEPEVDPVIQIASMVQRQGEKEPFIRTVFT
LQSCASIVGSQILCFTQEKQLLQSWAEFVRMVDPDIITGYNIQNFDLPYLLNRAATLKVN
YFPYLGRMRGIRSVLKDSSFQSKQMGRRENKTVNMEGRVLFDLLQVLLRDYKLRSYTLNA
VSFHFLQEQKEDVQHSIITDLQNGNEQTRRRLAVYCLKDAYLPLRLLQKLMCVINYMEMA
RVTGVPLTYLLSRGQQIKVVSQLLRQAMKQDLVMPVVKTEGGEDYTGATVIEPEKGYYSV
PIATLDFSSLYPSIMMAHNLCYTTLLQKGQAERLGLSSDDFIKTPTGDLFVKSSVRKGLL
PEILENLLSARKRAKADLKKETDPFRKQVLDGRQLALKISANSVYGFTGAQVGKLPCLEI
SQSVTGFGRQMIEQTKQLVESKYTISNGYPADAKVIYGDTDSVMVKLGVDTVQEAMNAGK
EAAEWVSSHFVPPIKLEFEKVHVMVALITEGYLINYTVVQVSKEAGCLKVLCLLAAHTAV
HVKCIIVCVCVCVCVCVCVYGRDPDGAVAHAKEVISDLLCNRIDISQLVITKELTRTAQE
YAGKQAHVELAERMRKRDAGSAPNLGDRVPYVIIKAAKGVAAYMKSEDPIYVLENNIPID
TEYYLEQQLSKPLLRIFEPILGETKAESVLLKGDHTRCKTVLTSRVGGLMAFAQKRSTCI
GCKAVLKTDTAVCDFCKKKESELYQKEIAHLSSLEEKFSRLWTQCQRCQGSLHEDVLCTS
RDCPIFYMRKKVQKDLGDQEKLVSRFGW
NT seq
3327 nt
NT seq
+upstream
nt +downstream
nt
atggattttaagcgacggaatggaggaccttcgatgggcggcgtctctcaggccaagagg
ggtaaaatgggctctgagtgggaggacggtccgtcgcactttgaggaagagctcgccctg
cttgacgaaatggacatggagatggaatcgggagaagggcaggcgggtcatgatgtcatc
ccagtgggtgatttatattcagcggatctgaatccacgctggcgccgtcccgctgcggcg
actcttcatcccgataaagacacgctcatctttcagcagattgacctggactattatctg
ggcgttgcagtggccgggatgccaggacaggtccaggggaaggttccggtggtccgtatg
tttggagtgacagacagtgggaacagcgtctgttgtcatatacacggttttgctccctac
ttctacgttcctgcaccagccggcttcactagttctcacctggcggagtttcagaaggag
ctgaacgctgctgtgttgaaggacatgcgctctaacaaagacaacatctcagtcactgtg
ctagcggtggacatcacccgcaaagagagtatgtacagttaccacggtaagcgtccactg
gacttcctgcgcatcaccatggcgatgccacgcctggttgccccggcgaaacgtattctg
gagcagggatttaagtttgctcacttctcccttcagagctaccctgcgtacgaggccaac
attgacttcgagatcaggttcatggtggactgtgatgtggtgggctgctgctggatcgag
ttgcctaaaggaaagtacaaactaagagaggagaagagtacaggagagacggactcccga
cacccaggcaaggtgtctctgtgtcagtacgaggtggatgttggatggacagatctgatc
agtcacccagcagaaggggactggcagagaatcgctcctctcagggtcctcagcttcgac
attgagtgtgcgggcagaaaaggtgtgtttccggagcctgaggtggacccggtgattcag
atcgcctccatggtgcagcgtcagggagagaaggagccttttatccgcactgtgttcacc
ttacagagctgtgctagtatagtgggctctcagatcctctgcttcactcaagagaagcag
ctactacagagttgggcagagtttgtgaggatggtggatcctgacatcattacagggtac
aatattcaaaactttgacctgccgtacctgctcaacagagccgctactttaaaggtgaat
tatttcccctatctgggtcgtatgaggggcatcaggtcggtccttaaagactccagcttc
cagagcaaacagatgggccgcagagaaaacaaaaccgtcaacatggagggcagagtgctg
tttgaccttcttcaggtcctgctgagggactataagctgcgctcgtacacactcaacgcc
gtcagtttccacttcctgcaggagcagaaagaggatgtccagcactccatcattacagac
ctgcagaatggaaatgagcagacgaggcggcgcttggctgtctactgtctgaaagatgcc
tacttgcccctgcgcttgctgcagaagctgatgtgtgtgattaactacatggagatggcc
agagtgacgggcgtgcccctgacctacctcctgtctcgaggccagcagattaaagtcgtg
tcccagttacttcgacaggccatgaagcaggacttggtgatgccggtagtaaagactgaa
ggtggggaggattatacaggtgctacagtcattgagccagagaaggggtactacagcgtg
ccgattgccactctggatttttcctcgctgtacccatccattatgatggctcataacctg
tgttacactacactgctgcagaaaggccaagcggagagactgggtctctcatcagatgac
ttcattaagacgcctacaggagatctgtttgtcaaaagctcggtgaggaagggcctcctt
cccgagatcctggagaacctgctgagtgcccgcaagagggcgaaggctgatctgaagaag
gagaccgacccgttcaggaagcaggtgttggatggcaggcagctggctttaaagatcagc
gccaactctgtgtacggtttcactggtgcacaggtgggcaaactgccctgtctggagatc
tcgcagagtgtcacaggcttcggcaggcagatgattgaacagactaagcagcttgtggaa
tccaaatacaccatctctaatggatatccagctgatgccaaggtcatctatggagacaca
gactctgttatggtgaaactgggagtggacacagtgcaggaggcgatgaacgcaggaaag
gaggcagctgagtgggtgtcctcacactttgtccccccaatcaaactggagtttgagaag
gtacatgtgatggtagcactcataactgaaggttacttaataaattacactgtagttcag
gtttccaaagaagcaggatgtttaaaggtcctctgtcttctagctgcacatacagctgtg
catgtaaagtgcatcattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtat
ggtagagatcctgatggagctgtagcccatgctaaagaggtgatctcagaccttctgtgt
aaccgcattgacatcagccaactggtgatcaccaaggagttgacgcgcacagcgcaggag
tacgcaggaaaacaggcccatgtggaactcgcagaaaggatgcgaaagcgagatgcaggc
agcgctcctaatctcggcgatcgagttccatatgttatcatcaaggcagctaaaggagta
gcagcgtacatgaaatcagaggaccctatttatgtgctggagaacaacatccctatcgac
acagaatactacctcgagcagcagctgtctaaacctctactgcgcatctttgagcctata
cttggagaaaccaaggctgagagtgtattactcaagggagatcacacacgctgtaagacc
gttctgacctccagagtgggcggcctcatggcctttgcgcagaaacgtagcacgtgcatt
ggctgcaaagcggttctcaaaacagacactgctgtgtgtgatttctgcaagaagaaggag
tccgagctctatcagaaagagattgctcacctgtcctcactggaggagaagttctctcgt
ctgtggactcagtgtcagcgctgccaagggtcccttcatgaagacgtgctgtgtaccagt
cgagactgtcctatcttctacatgaggaaaaaggttcagaaagatctcggtgatcaagag
aagcttgtttcacgtttcggctggtga
DBGET
integrated database retrieval system
