Pangasianodon hypophthalmus (striped catfish): 113527934
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Entry
113527934 CDS
T05759
Symbol
lrrc4b
Name
(RefSeq) leucine-rich repeat-containing protein 4B
KO
K16360
netrin-G3 ligand
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp04514
Cell adhesion molecule (CAM) interaction
phyp04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
113527934 (lrrc4b)
04517 IgSF CAM signaling
113527934 (lrrc4b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
phyp04515
]
113527934 (lrrc4b)
Cell adhesion molecules [BR:
phyp04515
]
Immunoglobulin superfamily
NGL family
113527934 (lrrc4b)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
I-set
Ig_3
LRR_1
LRR_9
LRR_14
ig
V-set
LRRNT
Ig_2
VEGFR1-3_N_Ig-like
LRR_EndoS
Motif
Other DBs
NCBI-GeneID:
113527934
NCBI-ProteinID:
XP_026771928
LinkDB
All DBs
Position
Unknown
AA seq
728 aa
AA seq
DB search
MRITTVTGLPNPAPFFFLLAQLLFWLLLLGQDIAGATSTCPTPCSCSNQASRVICTRRNL
DEVPENISNNTRYLNLQENSIQVIRSDTFKHLRHLEILQLSKNQIRQIEVGAFNGLPNLN
TLELFDNRLTLVPSQAFEYLSKLRELWLRNNPIETLPGYAFHRVPSLRRLDLGELKKLDY
ISDAAFVGLVNLRYLNLGMCGLKDIPNLTPLIRLEELELSGNRLEIIRPGSFQGLESLRK
LWLMHSQMSVIERNAFDDLKSLEELNLSHNSLHSLPHDLFTPLQKLERVHLNHNPWVCNC
DVLWLSWWLKETVPSNTTCCARCHAPPYLKGKYIGELDQSHFTCYAPVIVEPPTDLNVTE
GMAAELKCRTGTSMTSVNWITPNGTLMTHGSYRVRISVLHDGTLNFTNVTLRDTGQYTCM
VTNSAGNTTATAVLNVTAADTSVNYTYFTTVTVETVESTGEEDSALRSINETIIHIPGPT
PSGRLWPDAIPTTASSLSVFGSSSSPRATKPTFTVSVSEPSYPTGLDDVMKTTKIIIGCF
VAITFMAAVMLVVFYKLRKQHQLHKHHGPVRAIEIINVEDEIGASASVRGSGISGGSTMP
QAGSSGGSQSLRLHHPEIVNLPNLARTDHLNHYYKPHHFNNNMMSLGLSGSSGIGLNNNN
NPCSQAQPTPISCSQVPVSVSSIPSSMPLPTLGIHGSLKGLMGKGQNPQIEPLLFKSGSK
ENVQETQI
NT seq
2187 nt
NT seq
+upstream
nt +downstream
nt
atgcggatcaccacggtgaccggccttcctaaccccgcccccttctttttcctattggcc
cagctgctgttttggctcctcctcctgggccaagacatcgcaggagccacgtcgacctgc
ccgacaccttgcagctgctccaatcaagcgagccgagtgatctgtacgagacgaaacctg
gacgaggttccagaaaatatatccaataacacgcgatacctcaacttacaggagaactcg
atacaggtgataagatcagataccttcaagcacttgcgacatttggagatcctccagctt
tccaagaaccagattcgtcagattgaagttggtgcgttcaatggcctcccgaacctcaat
actttggaactgtttgataaccgtctcacgctggtgccatcgcaagcgttcgaatatctc
agcaagcttcgggagctctggcttcgaaacaaccccatcgagactctgccaggctatgcc
ttccaccgcgtgccctcacttcgccgtctcgatctgggtgagctaaaaaagctggactac
atttcagacgctgcctttgttggtcttgtcaatctgcgctacctgaacctgggcatgtgc
ggtctgaaggacatccccaacctgacacctctgatccggctggaggagctggagctctct
ggaaacaggctggaaatcataagacctggatcattccaaggcctggagtctttgcgcaaa
ctatggcttatgcactcccagatgtctgtcattgaacgcaatgcctttgatgacctcaag
agtctggaagagttgaatctatcccacaattccttgcactcgctgccccatgacctcttc
accccattgcagaagctggagagagtgcacctcaaccacaatccctgggtatgtaattgt
gatgtgctatggcttagctggtggctgaaagaaactgtaccaagtaacacaacttgctgt
gcccggtgccatgcaccgccctacctgaagggcaaatacattggagagctggaccaaagc
cacttcacgtgctacgcccctgttatcgtcgagcctcccactgacctcaatgtgactgaa
ggcatggctgctgaactcaagtgccgtactggaacctccatgacgtctgtaaactggatt
acacccaatggaaccctgatgacccatgggtcataccgcgtccgaatctctgtgctacat
gatggaactctgaatttcacaaatgtcaccttgcgcgacactggtcagtacacctgcatg
gtgaccaactcagctggcaacaccacagcgacggccgtcctgaatgtcaccgcagcagac
accagtgtcaattacacctattttactactgtcactgttgaaactgtagaatccacaggt
gaagaggattcagccctacgttcgatcaatgagaccattatccacatccctggtcctaca
ccttctggacgtctctggcctgatgccatcccaacaacagcttcctctctgtcggttttt
ggatcctcatcttctccccgagcaaccaaacccacatttactgtctcagtctctgagccg
agctaccccactgggctggatgacgtaatgaagactaccaagatcatcattggctgcttt
gtggctatcaccttcatggcagctgtcatgcttgtggtcttctacaagctgaggaagcag
caccagttgcacaagcaccacggtccagtgagagccatcgagattatcaatgtggaggat
gagatcggagccagcgctagtgtccgaggaagcgggatctctggtggttccaccatgccc
caggccggatccagtggaggaagccagagcctgaggctgcatcacccggagattgtcaac
ctgcccaacctggctcggacggaccaccttaaccactactacaagccccaccacttcaac
aacaacatgatgagtttggggctctctggaagctctgggatcggcctcaacaacaacaac
aacccttgttcccaggcccaacccacaccgatctcctgttcccaggtgcccgtctcagtg
agctccattccatcctcaatgcccctgcctacccttggcatccatggatcactcaaaggc
ctaatgggtaaagggcagaaccctcaaatcgagcctttactctttaagagtggctccaag
gagaatgttcaagagactcagatctga
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