Pangasianodon hypophthalmus (striped catfish): 113528109
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Entry
113528109 CDS
T05759
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113528109
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
phyp03041
]
113528109
03009 Ribosome biogenesis [BR:
phyp03009
]
113528109
Enzymes [BR:
phyp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
113528109
Spliceosome [BR:
phyp03041
]
Complex A
U1 snRNP components
U1 related factors
113528109
Complex B
113528109
Ribosome biogenesis [BR:
phyp03009
]
Eukaryotic type
Pre-60S particles
Helicases
113528109
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
Cas3-like_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
113528109
NCBI-ProteinID:
XP_026772266
LinkDB
All DBs
Position
Unknown
AA seq
625 aa
AA seq
DB search
MPGYSDRDRSRDRSNYGNSYSNGPPRFGGSRSGPSAGKKFGSPGDRLRKKHWNLDELPKF
EKNFYQEHPDVARRSPQEVEQYRRSKEITVKGRDCPKPTIRFHEANFPSYVMDVINKMNW
TEPTPIQSQGWPLALSGKDMVGIAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLA
PTRELAQQVQQVAVDYGKASRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEA
GKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFL
KDYVQINVGALQLSANHNILQIVDVCNDGEKEDKLLRLLEEIMSEKENKTIIFVETKRRC
DDLTRRMRRDGWPAMGIHGDKSQQERDWVLNEFKFGKAPILIATDVASRGLDVEDVKFVI
NFDYPNNSEDYIHRIGRTARSQKTGTAYTFFTPNNFKQAQDLVSVLREANQAINPKLIQM
AEDRGGRSRGGRGGGYRDDRRDRYSGGRRDYNYSQDSRGSDRSYDNGPKKAFSNKTQNGA
TYSNGASNYNGNSNNGFNGAYNGQSNFNGNQAGSFGNQSFQNKQFGANQGTAQNGANHNA
QFPFNPQQQPMQPMMPFSMPPPNFP
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atgcccgggtattccgacagagaccgcagccgcgacagaagcaattatggcaacagttac
agcaacgggcctccgcgctttggtgggagtcgaagtggtccatcggccgggaagaagttc
ggcagtccgggagacagactgcgcaagaaacactggaacctggacgagctgcccaaattc
gagaagaacttttaccaggagcacccggatgtagcgcgcaggtcaccgcaagaagttgag
cagtacaggaggagcaaagagatcacagtcaaagggagagactgtcccaaacctacaatt
aggtttcatgaggccaactttccctcttatgtaatggacgtgatcaataaaatgaactgg
actgaaccaactccgattcaatctcaggggtggccactggcactcagtggcaaagatatg
gttggcattgcccagaccggatctgggaaaacgctttcgtatttgcttcctgctattgtg
cacataaaccaccaaccattcctggagcgtggagatggacccatttgcctggtgttggct
cccactcgtgagttagcccaacaagtccagcaggtagcagtagactacggcaaagcttct
cgtctcaagtccacctgcatctatggaggagctcctaaaggaccacagattcgtgaccta
gagaggggggttgagatctgcattgctactccagggaggcttattgacttcctggaagct
ggaaagacaaatctgcgcaggtgcacatatctggtgctggacgaggctgacagaatgctg
gatatgggctttgaacctcaaatccgtaaaattgttgaccaaatcaggccggacagacag
actctgatgtggagtgctacctggcccaaagaggtccgtcagctggctgaggacttcttg
aaagattatgtccagatcaatgtgggagctctgcagctcagtgccaaccacaacatcctg
cagatagtggatgtatgcaatgatggagagaaggaggacaagttgctgcgcctgctagag
gagatcatgagcgagaaggagaacaagaccatcatctttgtggaaactaagaggagatgc
gatgacctcacgaggaggatgcgcagggacgggtggcctgcaatgggtatacatggagac
aaaagccagcaggagagagactgggtgctcaatgaattcaagtttggcaaagcacccatt
ctcattgctactgacgtcgcatcaagaggtctagatgtcgaggatgtcaagtttgtaatt
aatttcgattatcccaacaactctgaggactacatccaccgcattggccgcacggcacgt
agccagaaaactggaacagcctacaccttcttcacacctaacaactttaagcaagcgcaa
gaccttgtctctgtcctccgtgaagccaaccaggccatcaatcccaaactcatccagatg
gcagaagacagaggaggtcgttcaaggggcggtcgaggtggcgggtatagagatgatcgc
cgggatcggtactccggaggcagacgggactataactacagccaagacagtcgtggaagt
gatcgcagttacgacaatggaccaaagaaagccttcagtaacaagacacagaatggtgca
acatacagtaatggggccagcaattacaatggaaacagcaataatggctttaatggggct
tacaatggacagtccaactttaatggcaatcaggctggtagctttggaaaccagagtttc
cagaacaagcagtttggtgccaaccagggtaccgctcagaatggtgcaaatcacaacgca
cagtttcccttcaaccctcagcagcagccaatgcagcccatgatgcccttttccatgccc
cctcctaactttccctag
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