Pangasianodon hypophthalmus (striped catfish): 113528212
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Entry
113528212 CDS
T05759
Symbol
ddx42
Name
(RefSeq) ATP-dependent RNA helicase DDX42
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113528212 (ddx42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
phyp03041
]
113528212 (ddx42)
Enzymes [BR:
phyp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
113528212 (ddx42)
Spliceosome [BR:
phyp03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
113528212 (ddx42)
Complex B
113528212 (ddx42)
Complex C
U2 SnRNP specific factors
113528212 (ddx42)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
ERCC3_RAD25_C
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
113528212
NCBI-ProteinID:
XP_026772423
LinkDB
All DBs
Position
Unknown
AA seq
883 aa
AA seq
DB search
MNWNKGGPSGKRGFGFGGFSLSGGKKEEPRLSQQSHSAFGSSGSAGGFGKNQQLPAFYKI
GTKRANFDEENAYFEDDEEESSTADLPYIPAENSPTRQQMQSGGGGGSGGGGGGSDSEDD
LGVLPRVIERVAGKFFFSPLVSSRGIRDDIEEEDEQEAYFRYMAENPTAGLIQEEEEENV
DYDSDGNPIPSTTKKIIMPLPPIDHSEIDYPPFEKNFYNEHEELNSLTGAQVVELRHKLN
LRVSGAAPPKPCTSFAHFGFDEQLMNQIRKSEYTQPTPIQCQGVPIALSGRDIIGIAKTG
SGKTAAFIWPMLVHIMDQKELEQGEGPIGVIVCPTRELCQQIHTECKRFGKAYGLRSVAV
YGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATSLQRVTYLVFDEADRMFDMGFEYQ
VRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQLVEVLPS
GSDKWGWLTRRVVEFTSTGSVLIFVTKKANCEELATNLQQEGYSLGLLHGDMDQSERNKV
ISDFKKKSLPVLVATDVAARGLDIPSIRTVINYDVARDIDTHTHRIGRTGRAGEKGVAYT
LLTSKDTSFAGDLVRNLEGANQSVPKELLDLAMQNPWFRKSRFKGGKGKKLNVGGGGLGY
RERPGLGSDSSERSSGSVLGNYESYKPPTGAMGDRMAAMKQAFQAQYKNHFVAASGISPK
LSAQSNSTSGWTSAGSLSSVPSGAPEGSRTQSSSSPMPPPPPAISLGTKLAGFSSSGSLS
SVSDSYSSSSSSREESRHDRSRHGDSHHRHSDRDRYGDRDRYGDRDRDRDRHSDSRNGDG
GRRERDSWRGEREGGERASSHRGGEDSFAVPDPPKRKKSRWDS
NT seq
2652 nt
NT seq
+upstream
nt +downstream
nt
atgaactggaacaagggaggaccgagtggtaaacgagggtttggcttcggagggttttct
ctctccgggggtaagaaagaggagcctcggctgagccagcagtcccacagcgcgtttgga
agctcaggctctgcaggaggtttcggcaaaaaccagcagctgcctgccttctacaagatc
ggaaccaaacgcgccaactttgacgaggaaaatgcctatttcgaggatgatgaggaggaa
tcaagcaccgcggatctgccttatatcccagcggagaactctcctaccaggcagcagatg
caatctggaggaggaggaggaagtggaggaggtggaggaggatcagacagcgaagacgac
ttaggggttcttccacgggtgattgagcgagtcgcagggaagttttttttttctccgctt
gtttcttccaggggtattcgagatgacattgaagaggaagatgagcaagaggcttatttc
cgttacatggcggagaacccaacagctgggctgatccaggaggaagaggaggagaacgtg
gactatgacagcgacgggaaccccatcccttctaccactaaaaagattatcatgccgctt
cctcctattgaccactcagagatcgactaccctcctttcgagaagaacttctacaatgag
catgaagagctcaacagcttgactggagcacaagtggtggagctgagacacaaactcaac
ctgagagtgtctggcgccgctcctcctaagccctgcaccagtttcgctcattttggcttt
gacgagcagctcatgaaccagatccgcaagtctgagtacacacagcctacgcccatccag
tgccagggtgtccccatagccctgagcggcagagacatcatcggcatcgccaaaacgggt
agcggcaagacggccgccttcatctggccaatgctggtgcacatcatggaccagaaggag
ctggagcagggagagggtcccattggtgtgattgtctgccccaccagagagctctgtcag
cagatccacacggagtgtaagcgctttgggaaggcctacggcctgcgctcggtggctgtg
tacggagggggcagcatgtgggaacaggccaaggctctacaggaaggggctgagatcgtc
gtttgcactccgggtcgcctgatagatcatgtgaagaagaaggcgacatccctgcagaga
gtgacctacctggtgtttgatgaggctgatcgtatgtttgatatgggctttgagtatcag
gtgagatccatcgccagccacgtaagaccagacagacagactctactgttcagtgccact
ttcaggaagaagattgagaagttggcccgggatattctcattgacccgatccgcgtagtg
cagggagacattggagaggcgaatgaggacgtgacacagctggtggaggtgttgccgagt
ggctcggataagtgggggtggctgacacggagggtggtggagttcacctcgactggctct
gtgcttattttcgtgactaagaaagccaactgtgaggaactagccaccaacctgcagcag
gagggctacagcctgggcctgctgcacggagatatggaccagagcgagaggaacaaggtc
atcagcgacttcaagaagaagagcttgcctgtcctagtggccactgatgtcgcagctcgt
ggattggacattccctcgatccgtactgtcataaactacgatgttgcccgggacattgac
acacacacgcaccgcatcggccggacaggtcgcgccggagagaagggtgtggcctatact
ctgctcacaagcaaagacacctcgtttgccggcgaccttgttcgtaatttagagggagcg
aatcagagtgtcccgaaggaactgttggatttggccatgcagaatccttggttcaggaag
tcccgttttaagggtggaaaaggaaagaagctgaatgtcggaggtggaggtctcggatat
agggagagaccagggctagggtccgattcatcagagcgcagtagtggctctgtccttggc
aactacgagtcctacaaaccccccactggagctatgggagatcgcatggctgccatgaag
caagcctttcaggctcagtacaagaaccactttgtggcagcatcaggtatctctcccaag
cttagcgcacagtcaaacagcacctcaggttggacaagtgcaggcagtctgagttctgtg
ccctctggagcccctgaaggaagccgtacacagtcatcttcctcccccatgccccctcct
cctccagccatcagtttgggcactaagcttgccggcttcagcagctcgggctctttgagc
tccgtgtcagactcttactcctcctcttcttcatccagagaggaatcccgccacgacagg
agccgccatggagacagccaccatcgccacagcgacagggatcggtatggggaccgggat
cgctatggcgatcgcgacagggaccgagatcgtcacagcgacagccgcaacggcgatggt
ggtcgccgggagagggacagttggagaggagaaagggaaggcggggaaagggcaagctca
cacagaggaggtgaggacagctttgctgttccggatccaccaaaacggaagaagagcagg
tgggacagttag
DBGET
integrated database retrieval system
