Pangasianodon hypophthalmus (striped catfish): 113528613
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Entry
113528613 CDS
T05759
Symbol
smg1
Name
(RefSeq) serine/threonine-protein kinase SMG1
KO
K08873
serine/threonine-protein kinase SMG1 [EC:
2.7.11.1
]
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
113528613 (smg1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
phyp01001
]
113528613 (smg1)
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phyp03019
]
113528613 (smg1)
Enzymes [BR:
phyp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
113528613 (smg1)
Protein kinases [BR:
phyp01001
]
Serine/threonine kinases: Other
PIKK family [OT]
113528613 (smg1)
Messenger RNA biogenesis [BR:
phyp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
113528613 (smg1)
mRNA cycle factors
Common to processing body (P body) and stress granule
113528613 (smg1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SMG1
PI3_PI4_kinase
SMG1_N
FATC
FAT
LRS4
HEAT_ATR
HEAT
Occludin_ELL
Motif
Other DBs
NCBI-GeneID:
113528613
NCBI-ProteinID:
XP_026773065
LinkDB
All DBs
Position
Unknown
AA seq
2642 aa
AA seq
DB search
MSRKALGSRLSSAHKLHRNWNDWQPRLVCSVTGEVRVYDADGGHGENTFGWKSLGQELRI
NDVTADLPSFQHGHRALAAKDMRKSQDRPQAHSDESRLANLLRRVSREDDRDRRLATLKQ
MRELIIHSENKVVLVKQLDTILSTLNDILNESSKLLHELRQEAACCLGLLCAALSYEAEK
IFKWMFVKFSSCSKDEVKLLYLVAVYKALETAGEKKAFSPVMQVPWKRRDAATNVIPSPV
SRTLNEDSTVCLQTCSSLQVLSSSLPMELLQRCVDVCRVQLVHSTVRVRQAFGKLLRSIP
LHVALSNRSSSEIHEISLAIRRHMSKAPSNTFHPQDFSDLISFILYGTVHRGGGTSSGIR
TFFYTNRQTCQDWLTRIRLALMRVGLMSGQAAVTIRHGFDLLTEIKNSSAQGPEMEVPIT
MLVEALCELRCPEAIQGLAAWSLAHMGKSVAWVGSVALQAEGKFEKAALEYQEQLCAVTG
VDCSIKGFDRSLLKLTNSPTGNNSSPKHTGNGDIKKTVLLKSSECSSEVLNFLANKACEC
YVALSDWASVQEWQASMMALKKNSNSSATVNLKTDFNYVKALSRFEDGDFPECRAQLELL
PGEDYGLLNSSTKDKLDLKRLLPAVLSPDPSELQKAIEVQLLRSAVGAITSANHEQDQKV
LPSSDTLVKYLKQTGRIALGPLRLSTLTLCDSLPTLGTLQLHCTSSLETSLCSQHPSEEC
LIPLYSDALSTCKQQDVQPWLHALRYSTFQRQLFLKLRGSSGPVDSHLVELCLTAVKFAR
KQGNIALATRLLAQCSKPSADDPETPDLVQSFRQLSLEGAVAEKWGPELKIERAKVLFTA
GQSVAAMEMLSSCALSYCRSGKCERAACRSILTLCKWLLADWKDLTPQLKQVVKRNSSGS
PSALSKNIAALLELPVEEQGILRITTETTVSVGVGEADFVLGQLYQLSASQAPEVAKSWA
ALASWAYRWGRKVVDNASQGEGVPLLPGEKKEIEELLPSGTSDEDKETIFSILGQAMCRP
AGIQDEDMALQNEEDDEDDMVDVIWRQLLSSCPWLAEVEDGVTEGLIRVWRTVVDRIFSL
YRVSCRAYFTFLKLNAGQTPIDEDDPKLLLHPQGSKQSSDDVIVMATLRLLRLLVKHAGE
LREGLELGLASTPTAPWRGIIPQLFSRLNHPEAYIRQSICSLLCRVARDSPHLILYPAIV
GSISLGGEAQTAGTKLIMLSLQQRAQKRASYLLRLEEISPRLGSMTHTEMALPGEVSATD
AVTIHNVGGTITILPTKTKPKKLYFLGSDGKNYPYLFKGLEDLHLDERIMQFLSIVNTMF
TKVNQQESPRFHARHYSVTPLGTRSGLIQWVDGATPLFGLYKRWQQREAVLQAQKAQDSF
QQPQNLPMVPRPSELYYSKIGPALKAVGLSLDVSRRDWPLSVMRDVLRELMEATPPNLLA
KELWCSCTTPSEWWRVTQSYARSTAVMSMVGYIIGLGDRHLDNVLIDMTTGEVVHIDYNV
CFEKGKSLRVPEKVPFRMTHNIETALGVTGVEGIFRLSCEQVIQMMRRGRETLLTLLEAF
VYDPLVDWTAGGEVGFAGAVYGGGGQQAENKQSKREMERDITRSLFSSRVAEIKVNWFKN
RDEMQAVLPQVEMAVEEYLSLQEQLAQVDKAQGKLLEEMEFLEGADSRVDHPIHTLEHRY
SEHTQLQSRQRTVQDAIQSKLSDLDQWISQYQAAFGSLEATQLASLLQEISSPIDLGPPS
YVPATAFLQNAGQAHLISQCEALEAEVSALLQQRRSILRACLEHLHSYATVALLYPRAVL
HRHRVYTWKQWMEELVCDMTVEHCQAVYHHYEMQFAPQPPAATCQFLSSVEMDDGHCCKT
DWVSLQRNLVMEGAAASAGEQLVELTSRDGAWFLEELCSMSGNVTCLVQLLKECQLQSHD
LDVLSPEDTSQAVYLANGVYTCLQELNTNFRQIIFPEALRCMLKGESTLESMLSELDSLI
EQCADGVSLQGLGEALQAHLRNTAMGLDEDADAHYLEVTRVLRVQYSELIQPRNMEGSVQ
DTPKMSAGQMLLVAFDGMFAQLESAFGLLIDKLNSMDVPAAWRKVDVIWEARATQVHFFD
SVQTRQVLEEIFFLKRLQTIRDFFRLCASFAQTLSGTCPSPADDPPPSNGPVTLVKPIYR
GSTVVSEDQMTRPIKAFTADFVRQMLMGLPTQALGLALCSALSALGTDLIAQVEAKDFGA
EGKVSLDDLCKKAVEQGVQAGRISQLLLNRATVLASSYDTAWKKLDLVRRLELSIDACKV
SLQRAQLHIAMFQWQHEDVLGTRSQPMTVSPPPRSIILSNMKKKLYKLSQDDAAIASVQE
KLASLEGSIEQRLKWAGGANPALAPVLQDFESTITERRALVVKESQRATQVTFLCSTVLN
FEGLRTRTPEALSMDAALFDLVKRCQATCSYAAQFSTSVSSLELQLLHRLVRLSTTLTLY
KQRLLALSNSGCSPVFSAHVCVCVCVSCSVYNGLVGFASPLVTDKGSDCASPTSTVQTSF
AAAVRCSGVKTQPDSMSQNARKALPRNLGTPADTPPSTLLIANKSLAPSPKRTVRDPKTG
RAVQERNSYAVSVWKRVKAKLEGRDVDPNRRMSVTEQVDYVIKEATNLDNLAQLYEGWTA
WV
NT seq
7929 nt
NT seq
+upstream
nt +downstream
nt
atgagccgcaaagccctcgggtctcggcttagcagcgcccataaactgcaccggaactgg
aatgactggcagcccaggttggtatgctccgtcactggggaggttcgtgtgtatgacgct
gatggaggccacggtgaaaatacatttggttggaagtcgctggggcaagagttgaggatc
aatgatgtgacggcggatttacccagttttcagcatggacaccgtgctttagctgcaaag
gacatgaggaaatcacaggaccgaccgcaggctcattctgatgagtctcggctcgccaat
cttctgcggagggtgtcgcgggaggacgaccgggaccgcaggctggctaccttgaaacaa
atgagggaacttatcatccactcggaaaacaaggtggtcctggttaaacagttggatacc
attctgagcaccctgaatgacattttgaatgaaagcagtaaactcctccatgagctgcga
caggaagcggcctgctgcctgggtttgctctgcgctgccctcagctacgaagccgagaag
atcttcaagtggatgtttgtgaagttcagcagctgcagtaaggacgaggtgaagctgctc
tacctggtggccgtgtacaaggctctggagacggcaggggagaagaaagcgttctcgccc
gtcatgcaggtaccgtggaagcgcagggacgcggcgacaaacgtcattccttcaccagtg
tccaggacgctgaacgaagactccaccgtgtgtctccagacctgcagcagtctacaggtt
ctgtcctcgtccctccccatggagctcctgcagagatgtgtggacgtgtgccgggtgcag
ctggttcactcgaccgtacgagtcagacaggccttcgggaaactgctgagatccatcccg
ctgcacgtggcgctgagtaaccgcagctcctcagagattcacgagatctccctcgccatc
cggcggcacatgagcaaagcgccgagcaacaccttccacccgcaggacttctccgacctc
atcagcttcatcctgtatggaacagtccaccgtgggggtggcacgagcagcggcatcagg
accttcttctacaccaaccgtcagacgtgtcaggattggctgacgaggatccgcctggct
ctgatgagggtggggctcatgtccggccaggcggcggtcaccatccgtcacggcttcgac
ctgctcaccgagatcaagaacagcagtgcgcagggtcctgagatggaggttcccatcacc
atgttggtggaggctctgtgtgagctgcgctgtcctgaagccatccagggtctggcagcg
tggagcttggcccacatggggaagagcgtggcgtgggtcggctctgtagctctgcaggcc
gaggggaagtttgagaaagcggctctggaatatcaggagcagctgtgcgccgtcacgggg
gtcgactgctccatcaaaggcttcgacagatccttactgaagctcaccaactcgcccaca
ggcaacaactccagtccgaaacatacaggaaacggagacattaagaagacggtgctgttg
aagtccagcgagtgttcctccgaggtcctgaacttcctggccaataaggcgtgcgagtgt
tacgtggctctgagcgactgggcgtcggtgcaggagtggcaggccagcatgatggcgctg
aagaagaacagcaacagctcggcaaccgtcaacctcaagaccgacttcaactacgtcaaa
gctctgagcaggtttgaggacggagatttcccagagtgccgtgcgcagttggagctgctt
cctggagaagattacggcctcctcaactccagcacgaaggacaaactagacctgaagcgg
ctccttcctgccgtactcagtcctgatccatcagagctgcagaaggccatcgaggttcag
ctgctgaggagcgctgtaggagccatcacatcagccaatcacgagcaggaccagaaagtt
ctaccttcatcagacaccctggtgaagtacctgaagcagacgggccggatcgctctggga
cctctgcgtctgtccacgctcaccctgtgtgactcgctgcccaccctcggaaccctgcag
ctccactgcaccagctctttggagacctcgctgtgcagccagcacccctctgaggaatgt
ctgatcccgctgtacagcgacgctctgagcacgtgtaagcagcaggacgttcagccgtgg
ctccacgcgctcagatacagcacgtttcagaggcagctcttcctgaagctcagaggctcg
tcaggtcctgtggactctcacctggtggagctgtgtctgacggcggtgaagtttgctcgt
aagcaggggaacatcgcgctggccacgcgcctcctcgctcagtgcagcaaaccgtccgcc
gacgacccggagaccccggacctggtacagagcttcaggcagctgtccctagagggcgcc
gtggctgagaaatggggacctgagctgaagatcgaaagggctaaagtgctgtttactgca
ggtcagtccgtggctgccatggagatgttgagctcgtgtgcgctgtcgtactgccgctcg
gggaagtgcgagcgcgccgcctgccgctccatcctcacgctgtgcaagtggctgctggcc
gactggaaggacctgacgcctcagctcaaacaggtggtgaagagaaacagcagcggctcg
ccttcagccctcagcaagaacatcgccgccctgctggagctccccgtggaggagcagggt
atactgcgcatcaccacggagaccacagtgagcgtaggagtcggagaagcggactttgtc
ctgggccagctgtaccagctctctgcgagccaggcgcctgaagtggccaaatcctgggct
gctttagcgagctgggcttacagatggggccggaaggtcgtcgacaacgcaagtcaagga
gaaggggttcctctgctgccgggagagaagaaggagatcgaggagttactgccgtctggc
accagcgacgaagacaaggagacgattttcagcatcctgggccaggccatgtgtcgacca
gctggaattcaggatgaggacatggctctgcagaacgaagaggacgatgaggacgacatg
gtggatgtgatctggaggcagctgttgagctcgtgcccgtggctggcggaggtggaggac
ggcgtgacggaggggctgatccgggtgtggaggacggtggtggaccgcatcttcagcctc
taccgcgtctcctgcagggcttatttcaccttcctcaagctcaacgccggacagacgccc
atcgacgaggacgaccccaaacttctgctgcaccctcagggcagtaagcagagcagcgat
gacgtgatcgtgatggcgacgctgcgcctgctgcgcctgctagtgaagcacgccggagag
ctgagggaggggctggagctcggcctggcctccacgcccaccgcgccctggagaggcatc
atcccacagctgttctccagactgaaccaccccgaggcctacatccgccagagcatctgc
agcctgctgtgtcgcgtagcccgggactcgccacacctcatcctctaccccgccatcgtc
ggctccatctcactcgggggagaggctcagaccgccggtacgaagctgatcatgttgagt
ctgcagcagcgagctcagaagcgagcgagttatctgctgcgtctggaggagatcagtcct
cgcctgggctccatgacgcacacggagatggctcttccaggagaggtttctgccaccgac
gccgtcaccatccacaacgtcggcggcaccatcaccatcctgcccaccaagaccaagccc
aaaaaactctacttcctcggctctgacggcaaaaactacccgtacctcttcaaaggtttg
gaggatttgcatttagacgagaggatcatgcagttcttgtccatcgttaacaccatgttc
actaaagtaaaccagcaggagagtccacgcttccacgcccgtcactactcggtcacgccc
ctcggcactcgctcgggtctcatccagtgggtggacggagccacgcctctgttcggcctc
tacaaacgctggcagcagcgtgaggctgtgctccaggctcagaaggctcaggactcgttc
cagcagccgcagaacctgcccatggttccgcgccccagcgagctctactacagtaagatc
gggccggctctgaaggcggtgggactcagcctggacgtgtcgcgccgtgattggccgctc
agcgtcatgagggacgtcctgcgggagctgatggaggccacgccccctaacctgctggcc
aaggagctgtggtgctcgtgtaccacgcccagcgagtggtggagggtcacgcagtcgtac
gccaggtccactgctgtgatgtcaatggtgggttacatcatcggtttaggagaccgtcac
ctggacaacgtgctgatcgacatgacgaccggcgaggtggtgcacatcgactacaacgtc
tgcttcgagaaagggaaaagtctgagggttccggaaaaggttcctttccgtatgacgcac
aacatcgagacagcgttaggagtcacgggagtggaaggaatcttcagactctcctgcgaa
caggtgattcagatgatgcgtcggggcagagagaccctcctgaccctgctggaggcgttt
gtgtacgaccccctggtggactggacggcgggcggagaggtgggcttcgccggcgccgtg
tacggaggaggaggacagcaggccgagaacaagcaaagcaagagggagatggagagggac
atcacgcgcagcctgttctcctcacgcgtagccgagatcaaggtgaactggtttaagaac
cgtgacgagatgcaggcggtgctgccgcaggtggagatggccgtggaggagtacctgagt
ctgcaggagcagctcgctcaggtggacaaggcgcagggcaagctgctggaggagatggag
ttcctggagggagcggacagcagagtggaccaccccatccacacgctggagcacagatac
tcggagcacacgcagctgcagtcgaggcagaggaccgtacaggatgccatccagagcaag
ctgtcggatctggaccagtggatctctcagtaccaggcggcgttcgggagtctggaggcc
acgcagctcgccagcctgctgcaggagatcagcagccccatagacctcggtccgcccagc
tacgtccccgctacagcgtttctgcagaacgcaggtcaggctcatctgatcagccagtgc
gaggctctggaggcggaggtgagcgctctcctgcagcagcgccgctccatactgcgcgcc
tgcctcgagcacctgcacagctacgccaccgtggccctgctgtacccccgcgccgtcctg
caccgccacagggtctacacctggaagcagtggatggaggagctggtgtgtgacatgacg
gtggagcactgccaggccgtctatcaccattacgagatgcagtttgccccccagccgccg
gccgccacgtgtcagttcctgtcgagtgtggagatggatgatggtcattgctgtaagact
gactgggtgtctttacagcgaaacctggtgatggagggcgcggcggcgagcgcaggagag
cagctggtggagctgacgtcccgggatggagcctggtttctggaggagctctgcagcatg
agtggaaatgtcacgtgtctggtgcagctgctgaaagagtgccagctgcagtcccacgac
ctggacgtcctcagccccgaggacacctcgcaggccgtctacctggccaacggagtctac
acctgcctacaggagctgaacaccaacttccgtcagatcatcttccccgaggctctgcgc
tgcatgctgaagggagagagcactctggagagcatgctgtccgagctggactctctgata
gagcagtgtgcagacggcgtgtccctgcagggcctgggggaggcgctgcaggctcacctc
cgcaacaccgccatggggctggacgaggacgccgacgcacactacctcgaggtcaccagg
gttctgcgtgtgcagtactcggagctgattcagcctcggaacatggagggctccgtacag
gacacgcctaaaatgagcgcggggcagatgctgctggtggccttcgatgggatgttcgct
cagctggagagcgctttcgggctcctgattgataagttgaactccatggatgttcctgct
gcttggaggaaggtggatgtgatctgggaggctcgggccacgcaggtgcatttctttgac
agcgtgcagacgcggcaggtcctggaggaaatcttcttcctcaagaggctccaaacgatc
cgtgacttcttccggctgtgtgcctcgttcgctcagacgctatcaggcacctgcccttct
cccgctgacgaccccccgccgtctaacggccccgtcacgttagtgaagcccatataccgc
ggctccacggtggtcagcgaggaccagatgacgcggcccatcaaagcgttcacagcagac
tttgtgaggcagatgctgatgggtctgcccactcaggctctgggcctggctctctgcagc
gccctcagtgctctcggcacagacctcatcgctcaggtcgaggctaaagacttcggcgcc
gaggggaaggtgtctctggacgacctgtgtaagaaggcggtggagcagggcgtccaggcg
ggacggatctcccagctgctgctgaacagagccacggtgctggccagctcctacgacacg
gcgtggaagaaactggacctggtgcgccgtctggagctcagcatagacgcctgcaaggtc
agcctgcagagggcgcagctgcacatcgccatgttccagtggcagcacgaggacgttctc
gggactcgctctcagcccatgacggtcagccctccgcctcgctccatcatcctcagcaac
atgaagaagaagctgtacaagctcagccaggacgacgcggccatcgccagcgttcaggag
aaactggcgtcgctcgagggcagcattgagcagcggttgaagtgggcgggcggagcaaac
ccggctctggcgcccgtgctgcaggactttgagagcaccatcactgagcggcgtgcccta
gtggtgaaggagagtcagcgcgccactcaggtcaccttcctctgcagcaccgtgctcaac
ttcgagggccttcgcacgcgcacccccgaggccctgagcatggacgccgctctgttcgac
ctggtgaagcgctgccaggccacgtgctcctacgccgcccagttcagcacctccgtctcc
tctctggagctgcagcttctccacagactggtgcgtctctctacaacacttactctttat
aaacaacgtctcttagcgctgtcgaattctggatgcagtccagtgttctcagctcacgtg
tgtgtgtgtgtgtgtgtttcctgcagcgtgtataacggcctggttggatttgcgtctccc
ctcgtcactgacaaaggaagtgactgtgcaagccccacgtcaaccgtgcagacgagcttc
gccgccgcggtgcgatgcagtggcgtgaagacgcagcctgacagcatgtctcagaacgct
cgcaaagcccttcctcgcaacctggggaccccggcagacaccccgcccagcaccctgctc
atcgccaacaaaagcctggccccgagccccaaacgcaccgtcagggacccgaaaaccggc
agagctgtgcaagagagaaactcgtacgctgtgagtgtttggaagagagtgaaggcgaag
ctggaagggcgggacgtggatccgaaccggagaatgagcgtcaccgagcaggtggattac
gtcatcaaggaagccacgaacctggacaacctggcgcagctgtacgaaggctggacggcg
tgggtgtga
DBGET
integrated database retrieval system
