Pangasianodon hypophthalmus (striped catfish): 113528715
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Entry
113528715 CDS
T05759
Symbol
taf1a
Name
(RefSeq) TATA box-binding protein-associated factor RNA polymerase I subunit A isoform X1
KO
K15212
TATA box-binding protein-associated factor RNA polymerase I subunit A
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
phyp03021
]
113528715 (taf1a)
Transcription machinery [BR:
phyp03021
]
Eukaryotic type
RNA polymerase I system
Basal transcription factors
SL1/TIF-1B
113528715 (taf1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TAF1_subA
P16-Arc
MyTH4
COG4_N
Motif
Other DBs
NCBI-GeneID:
113528715
NCBI-ProteinID:
XP_026773183
LinkDB
All DBs
Position
Unknown
AA seq
439 aa
AA seq
DB search
MDHLQLHVPDAHHNYDTSEDEGFQTALKQSSLLHVSPTKGQCKESGFHKSTRLCLHAIRD
AILHHRWQEAAQYLEVYTQTLEDTTTSKQSVACEIIWRLGTEVLQHHPNKDLEHFNVLYE
RMKNTGVKNYAKICLEHTFHLLLNGHIHNAKQQLSVAMSWRYGKQSASQSLELKLIHAYC
GFLDYLVWSTKRSSVSDAEESGNNREMHSYFRQASVTLQEIIKQPGVWDPFVWGCIDMLE
FYNDEEEALRLLQNYAYNKDYPSNPNAHIYLYNYQKRHKASPDQLISTLKVLHSLVPSHE
LMLEYCALLMKSGEQKNLQHALSVVMKLLEYASWKTDVNAWTCLLEVLKCLEKKELKNLI
KEEWGGRRDLWLKMHYKTFHSMKDSKENTKLMKVKLKVMQLLGIYNRRYNKVYYQEEKKK
RITSKKHDVLKEESSLLSC
NT seq
1320 nt
NT seq
+upstream
nt +downstream
nt
atggatcatctccagctgcatgttccagacgcacatcacaactatgacacttcggaggat
gaaggatttcagacggcgctgaaacagagcagtttactgcacgtctctcccactaaaggg
caatgtaaggaaagtggatttcataaaagtacaagattatgtctccatgccattcgagat
gctattctccatcatcgctggcaagaggctgctcaatatttagaagtttacactcagaca
ctggaggacaccacgaccagcaagcagtcagtagcctgtgagattatttggagactcggc
accgaagtcctccagcatcatccaaacaaagacctggaacattttaatgttctgtacgag
cggatgaaaaacactggagtgaaaaattatgctaagatctgtttggagcacacgttccac
ctcctgctgaatggccacattcacaatgccaaacagcagctatcagttgcaatgagctgg
aggtacggcaagcagtctgcaagtcagtctctggagttaaagctcatccatgcgtactgc
ggctttctggattatttggtctggtctacgaagaggtcgtccgtgtctgatgcagaggaa
tcgggaaataaccgagagatgcacagctacttcagacaagcctctgtgaccctgcaggaa
atcatcaaacagccaggagtctgggaccctttcgtatggggttgcatcgatatgctagaa
ttctacaacgatgaagaagaagctctacggttactgcaaaactacgcctataacaaggat
tatccatcaaaccccaatgctcacatttacttgtacaactatcagaaaagacataaagct
tcaccagaccaacttattagtactctaaaggtgctgcactcgttggttcccagtcacgag
ctgatgctggaatattgcgctctgttgatgaagtcaggagaacagaaaaatctgcagcat
gctcttagtgttgttatgaagctcctagaatacgccagctggaagactgatgtgaacgcg
tggacgtgtctgctggaggttctcaaatgccttgaaaagaaagagcttaagaatcttata
aaagaagagtggggaggaagaagagacctctggttgaaaatgcattataaaaccttccac
agcatgaaggattctaaagagaacaccaaacttatgaaagtcaaactcaaagtaatgcaa
ctcttaggcatatacaacagacgttacaataaggtgtactatcaagaagaaaagaagaaa
aggataacgagcaaaaaacatgatgttctgaaagaagagtccagtttgctgtcctgctga
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