Pangasianodon hypophthalmus (striped catfish): 113528837
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Entry
113528837 CDS
T05759
Name
(RefSeq) syntaxin-binding protein 5-like isoform X1
KO
K08518
syntaxin-binding protein 5
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
phyp04131
]
113528837
Membrane trafficking [BR:
phyp04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
113528837
SNARE
VAMP, Ykt6, Sec22 (R)
Tomosyn
113528837
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LLGL
Beta-prop_EML_2
WD40_CDC20-Fz
WDR55
WD40_WDHD1_1st
Beta-prop_RIG_2nd
ANAPC4_WD40
WD40
Beta-prop_HPS5
WD40_Prp19
Beta-prop_IFT140_1st
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR19_1st
EIF3I
Beta-prop_NUP159_NUP214
Lgl_C
Beta-prop_Vps41
Beta-prop_VPS8
Synaptobrevin
WD40_like
CFAP43_N
Beta-prop_IFT122_2nd
Motif
Other DBs
NCBI-GeneID:
113528837
NCBI-ProteinID:
XP_026773384
LinkDB
All DBs
Position
Unknown
AA seq
1139 aa
AA seq
DB search
MKKFNIRKVLDGLTAVSSPSASPHAGAKENDFILPETLQSEHFQLCKTVRHGFPYQPSSM
AFDPVQKILAVGTQSGALRLFGRPGVECYCQHESGAAIIQLQFLINEGALVSALADDSVH
LWNLRQKRPAVLHSLKFNRERITFCHLPFQSKWLYVGTERGNIHIVNVESFTLSGYTIMW
NKAIELSSKAHPGPVVHISDNPMDEGKLIIGFESGIVVLWDLKSKKADYRYTYDEAIHSV
AWHHEGKQFICSHSDGTLTIWNIKSPAKPAQTITPHGKQPKDGKKPEPCKPILKVEYKTT
RAGDPFMILSGGLSYDTVGRRPCLTVMHGKSTAVLEMDYPIVDFLTLCETPYPNDFQEPY
AVVVLLEKDLVVIDLAQNGYPIFENPYPLTIHESPVTCCEYVADCPVDLIPALYSVGSRQ
KRQGYSKKEWPISGGNWGQGTQSYPEIIITGHADGSVKFWDASAIMLQVLYKLKTAKVFE
KARSKEEKAYTEIVDEDPFAIQLMAWCPDSRMLCVAGVSAHVIIYRFSKQEIMTEVIQLL
EVRLQYELNDLESPEGDQTPAPPTPNTSPSPQNAAPHTHPSTSSNSSDGIRDNVPCLKVR
SSPLKQSPGYQVELVVQLVWVSGEPPQQISSLAINSSYGLVVFGNTNGLVVVDYLQKTVL
LNLNTVELYGSSDPYQRQPRSPRKSRQPSGGLCDINEGSATSEDRCKSPTSVLTSNHQQF
YNGGGRGAKMSRKLSLPTELKPDLVLLSVCPPRGAIPLDNRDNSFSRSRSSSVTSIDKEA
REAITSFYFSQTYTRKMDSSISPALWVGTSLGTVLAISLNIPPPGEQRLLQPVIVSPSGT
FIRLKGSIIRMAFLDGSGSLLPPASEPWYELNADSEEKERVRRRRPVSVSPSTSQDLNES
QYMVVCSEKQAKVISLPSQTCIFKHNITETSFVLRADVVHAGPGICVACFCANGHIMTLS
LPGLRPLLDVNYLPLTDMRIARTFCFTNLGQAMYLTSPTEIQRITYSQDVCENLQEMLGE
LFTPVETPEAPNRGFFKGLFGGGAQSLDREELFGESGAGKASRSLAQHIPGPGGIEGMKG
AAAGIVGDLARARIALDERGHKLSEVEERTAAMMASADSFSKHAHEMMLKCKDKKWYQF
NT seq
3420 nt
NT seq
+upstream
nt +downstream
nt
atgaagaagtttaatattcggaaggtgctggacggcttgacggctgtctcctcgccctcg
gcgtcgccgcatgcaggggccaaagagaacgacttcatcctcccggagaccctccagtcc
gagcacttccagctctgcaagactgtccgccatggttttccctatcagccatcttccatg
gccttcgacccggtccagaaaatccttgctgtcgggactcaaagtggagcattacggtta
tttggtcgtcccggcgtggaatgttactgtcagcatgagagcggagcagccatcatccag
ctccagttcctcatcaacgaaggggcgttagtgagtgctttagctgacgacagcgttcac
ttatggaacctgcgtcagaagagaccagccgtgctgcactcccttaagttcaacagggag
aggataacattctgccacctgcctttccaaagtaagtggctgtacgtcggcacggaacga
ggaaacatccacatcgtaaacgtggagtccttcaccctctcaggatacaccatcatgtgg
aacaaagccattgaactgtcctccaaggcccaccctggtcctgtcgtccacataagtgat
aacccaatggatgaaggcaagctcataataggatttgagtctggcattgtggtgctgtgg
gacttgaagtcaaagaaggccgactaccgctatacttatgacgaggcgatccattctgtg
gcctggcaccatgaggggaagcagttcatctgtagtcactcagacggcacactgaccata
tggaatataaagtccccagccaagcctgcacagacaatcaccccacatggaaaacagccc
aaggatggaaagaagccagagccatgtaaacccattctcaaagtagagtacaagacaacg
agggcaggggatccatttatgatcctgtctggtggtctgtcctacgacacagttggtcgg
cggccatgtttgactgttatgcatgggaagagcaccgcggtgctggagatggactatcct
atcgtagacttcctcacgctctgcgaaacgccatatcctaatgattttcaggaaccttat
gctgtagtggtccttctagaaaaggatttagttgttattgacctcgcacaaaacggttac
cctatctttgagaacccctaccccttgacgattcacgagtctccagtgacgtgttgtgaa
tacgtcgccgactgtcccgtagacctcattcctgcactttattcggtcggctcccgccaa
aaacgacagggctacagcaaaaaggaatggcctataagtggtggaaactggggccagggc
actcaaagctatccagaaataataataactgggcatgctgatggttctgtgaagttttgg
gatgcctctgcaataatgctccaggtgttgtacaagctgaagacagccaaggtgtttgag
aaagcgcgcagtaaggaggagaaagcgtacacggagatagtggacgaggatccgtttgcc
atccagctcatggcgtggtgtcctgacagccgaatgctgtgtgtcgccggagtgtctgct
cacgtcatcatctacaggttcagcaaacaggagatcatgactgaggtcatccagttattg
gaggtccgattgcagtatgagctgaatgacctcgagtcgccggaaggggaccagacacca
gctcctcccactccaaacacctcaccaagtccgcagaacgctgctccgcacacacacccc
tccaccagcagcaactcgtctgatggcataagagataatgtgccctgtctcaaggtgcgc
agcagtcctctgaagcagtctcctggatatcaggtggagctggtggttcagttagtctgg
gtcagtggagagccgccgcagcagattagcagcctggccatcaactcctcatatggcctc
gtggtctttggcaatactaatggcctggttgtggtagattacctccagaagactgttctg
ttgaatttgaacactgtagagctgtatggctccagcgacccctatcagagacaaccccga
tcacctcgcaagagcaggcagccttctggagggctgtgtgacatcaacgaaggctcagcc
acgtcagaggaccgctgcaaatcccccacctcagtgttgacgtctaaccatcagcaattc
tacaatggcggcggtagaggagcaaagatgtcacggaaattaagcttgcctactgagcta
aagccagacttggtcttactctctgtatgtccaccgcggggtgccataccgctagacaac
agggacaactcattcagccgctcgcgcagctccagcgtgaccagcatcgataaggaagca
cgggaagccataacgtcgttctacttctcccagacgtacacgcgtaaaatggacagctca
ataagccccgccctgtgggtgggcacctccctgggtacagtccttgctatctccctcaac
ataccccctccaggagagcaacggctactgcagcccgtcatcgtctcacccagtgggact
ttcattagactaaaaggaagcatcatccggatggcgttcctggatggatcaggctcactg
ctgccgcccgcctcagagccgtggtacgaactgaacgccgacagtgaggagaaggagaga
gtgaggaggaggaggccagtgtccgtctcgccctccacctcgcaagacctgaatgagagc
cagtatatggtggtatgctcagagaagcaggccaaagtgatttcgctaccctcacaaacc
tgcatcttcaagcacaacatcacagagacatcgtttgtgctgcgggcagacgtggtgcac
gcgggcccaggcatctgtgtggcatgcttctgtgccaacggacacatcatgaccctcagt
ttgcctggactcagaccattgctggatgtaaactacctgccactaacagacatgaggata
gccaggaccttctgcttcaccaacctgggccaggccatgtacctgacctcccctactgag
atccagaggataacctacagccaggacgtctgcgagaacctgcaggagatgctcggcgag
ctgttcactccggtggagacgccagaggctccaaacaggggattctttaagggccttttt
ggaggaggtgcacagtcactggatcgggaagaactctttggggagtctggggcaggtaag
gcgtcccggagccttgcccaacacatccctggaccagggggcattgagggcatgaagggg
gcagcagcgggtattgtgggcgacctggctcgcgcaaggatagcgctggatgagaggggg
cataaactgagcgaggtggaagagcggacggcggccatgatggctagcgctgactcgttt
tccaaacatgcccacgagatgatgctgaagtgtaaggacaagaaatggtaccagttctga
DBGET
integrated database retrieval system
