Pangasianodon hypophthalmus (striped catfish): 113528875
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Entry
113528875 CDS
T05759
Symbol
pcdh19
Name
(RefSeq) protocadherin-19 isoform X1
KO
K28837
protocadherin-19, delta 2
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp04519
Cadherin signaling
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04519 Cadherin signaling
113528875 (pcdh19)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
phyp04515
]
113528875 (pcdh19)
Cell adhesion molecules [BR:
phyp04515
]
Cadherins
Protocadherins
113528875 (pcdh19)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Ig_CLSTN
Cadherin_FAT4_N
Ig_Cad99C_N
Motif
Other DBs
NCBI-GeneID:
113528875
NCBI-ProteinID:
XP_026773462
LinkDB
All DBs
Position
Unknown
AA seq
1087 aa
AA seq
DB search
MDFVQVILCFLACWSGAGAVFSLKYTVEEELRAGTKIANVTADAKVAGFALGNRQPFLRV
ISNSEPRWVNLSPAGLLLTKQKIDRDAVCRQTPKCIISLEVMSNSMEICVIKIEILDVND
NAPRFPTSHIDIEISENAAPGTRFPLEGASDPDSGSNGVQTYTITPNDIFGLEIKTRGDG
SKIAELIVEKTLDRETQSHYTFEITAEDGGEPPKTGSVQLNIKVIDSNDNNPVFDEPVYT
VNVMENSPINTLVIDLNATDPDEGTNGEVVYSFINFVSNLTKQMFKIDPKTGIISVNGIL
DHEELRVHEIDVQAKDLGPNSIPAHCKVIVNVIDVNDNAPEIKLLSENSEMVEVSENAPL
GYVIALVRVSDNDSGANGKVQCRLQGNVPFRLNEFESFSTLLVDGRLDREQRDMYNLTIL
AEDSGYPPLRSSKSFAVKVTDENDNPPYFTKPHYQAMVLENNVPGAFLLAVSARDPDLGM
NGTVSYEIIKSEVRGMSVESYVTVNSNGEIYGVRAFNHEDTRTFEFKVSAKDGGDPSLTS
NATVRIVVLDVNDNTPVMTTPPLVNGTAEVSIPKNAGVGYLVTQIKADDYDEGENGRLTY
SISEGDMAYFEIDQINGEVRTTKMFGENAKPSYQITVVAHDHGQTSLSASAYIIVYLSPD
LNTQEQIGPVNLSLIFIIALGSIAAILFVTMIFVAVKCKRDNKEIRTYNCSFFYLRRVAE
YSYGNQKKSSKKKKLSKNDIRLVPRDVEETDKMNVVSCSSLTSSLNYFDYHQQTLPLGCR
RSESTFLNVESQNSRNAAPIHGYHHTFTGQGPQQPDLIINGMPLPETENYSIDSSYVNSR
AHLIKSTSTFKDMEGNSLKDSGHEESDQTDSEHDVQRGHYADTAVNDVLNMTVPPNSCQL
SDPDPSEGFHCQDECRILGHSDRCWMPRVPVSAHVKSPEHSRDVIALSIEATGMDVPHYE
DCGTSKRTFATFGKDGPDEEPKGTRTNEMTTGICSPKANSGIREAGNGREAISPITSPAH
LKSPQSKPPTGYNTLKCCDVERIANRSLLRQPEGKDSEPAMREINTQLQDGREKESPSSR
RLKDIVL
NT seq
3264 nt
NT seq
+upstream
nt +downstream
nt
atggatttcgtgcaagtgattctgtgctttctggcgtgctggagcggcgccggggccgtt
ttcagtctgaaatacacagtggaagaagaattgcgtgcgggaacgaaaatcgccaatgtc
acggcggacgcgaaagtggctggattcgcgctcgggaatcggcaaccttttttgcgagta
atctccaattccgaaccgcgatgggtaaacctaagcccggcaggactgctcctcactaag
cagaaaatcgatcgcgacgctgtttgccggcagacgccgaagtgcatcatttctctggag
gtaatgtccaactcgatggagatatgcgtgattaaaatcgagatactggacgtgaacgat
aacgcgccccgattccccaccagccatatcgacattgagatatcggaaaacgccgctcca
ggcacgcggtttcccctagagggggcaagcgatccggactcaggaagcaatggtgttcag
acttacacgatcacccccaacgatattttcggcctggagatcaagaccaggggagatgga
tctaaaatagccgagctcatagtagaaaagactctggacagggagacgcagtctcattat
acgtttgaaatcacggctgaggacggaggagaaccaccaaagactgggagtgtacaactt
aacatcaaagtaatcgactccaatgataataaccctgtgtttgatgagcccgtttatact
gttaatgtgatggagaattctcctataaatacattagtaatagacttgaatgccactgat
ccagatgaaggaacaaacggtgaagttgtatactcatttattaattttgtgtccaatctg
actaaacaaatgttcaaaattgatcccaaaactggtatcataagtgttaatggaatttta
gaccatgaagaactgcgtgtgcatgaaatagatgttcaagccaaagatctgggtccaaat
tccattccagctcactgcaaagtgattgtcaatgtaatagacgtcaacgacaatgcacca
gaaattaagcttttgtctgaaaacagtgagatggtagaggtcagtgagaatgcacctctt
ggatatgtcatcgcactggttagagtttcagacaatgattcaggtgcaaacgggaaagtg
cagtgcagactgcagggcaacgtgcctttcagactcaatgagtttgagagcttctccacc
ttacttgttgatggccgactagacagggagcagagagacatgtacaatcttaccatcttg
gctgaggatagtggttatcccccactgagaagttcaaaatcttttgcggttaaagtaaca
gatgaaaatgacaatcccccttatttcacaaagccacattatcaagcaatggtgttggaa
aacaatgtcccaggtgcgttcctactcgcggtgtctgccagagatcctgacctgggaatg
aatggcacagtgtcttatgaaatcatcaagtcagaagttcgaggaatgtcagtggagtct
tatgttactgtaaactcaaatggcgaaatttatggggtcagggcttttaatcatgaagac
acacggacatttgaatttaaagtctctgccaaagatggaggagatccttcattaacaagt
aatgccacagtgcgcattgttgttctggatgtaaatgacaacacgcctgtgatgacgacc
ccaccactcgttaatggcactgcagaggtttccatccccaaaaatgctggagttggttat
ttggttactcaaatcaaggctgatgactatgatgagggagaaaatggaagactgacatat
tccatctcggagggagacatggcatactttgaaattgaccagattaacggtgaagtgcgg
accacaaaaatgtttggagaaaacgccaagccctcctatcagatcactgttgtggcccat
gatcatggccagacatctttatctgcttctgcgtacatcattgtctacctctctccagac
cttaatacacaggaacagattggaccagtaaacctgtccctcatcttcattatcgctctg
ggttccattgctgctattttgtttgtcacaatgatctttgtagccgtgaagtgcaaaagg
gataacaaggaaattcgcacatacaactgcagttttttttacctgcgcagggtggcggag
tactcatatggcaaccagaagaagtcgagcaagaaaaagaaattgagcaagaatgatatc
cgcctggtgccacgtgacgtggaggagacagacaagatgaatgtggtgagctgctcatcc
ctcacttcctcacttaactactttgactaccaccagcagacactgccactgggctgcaga
cgctctgagagcaccttcctcaacgtggaaagccagaactcaagaaatgccgcaccgatc
catggctaccaccacaccttcactgggcagggcccacaacagcccgacctcatcatcaac
ggcatgccactgccagagacagagaattattccattgactccagctatgtaaacagcaga
gcacacctcatcaaaagtacatcaacatttaaggacatggagggtaacagcctaaaggac
agtggtcatgaagaaagtgaccagacggacagtgagcatgatgtacagaggggccactat
gctgacacagctgtgaacgatgtactcaatatgactgtgcctcccaacagctgccagcta
tcagatccagatccctcagaaggcttccactgccaggacgagtgtcggatcctgggccac
tcagaccgctgctggatgccacgtgtgccagtgtcagcacatgtcaagtcacccgagcac
agtcgtgacgtcatcgccctgtctattgaggctactggcatggatgtgccacattatgag
gactgtggaaccagcaaaaggacttttgccacctttggcaaggacggtccagatgaggag
cctaaaggcacgaggacaaatgagatgaccacaggcatctgcagccctaaagctaacagt
ggcattcgtgaggccggaaacgggcgtgaggccatcagccccatcacatcaccggcacac
cttaagagcccgcagtccaagccacccactggctacaatacattaaaatgctgcgatgtt
gagcgcatcgcaaaccgtagtctgctgcgccagccagagggcaaagacagcgagccggcc
atgcgtgagatcaacacacaactgcaggatggacgggagaaagaatcccctagtagcagg
cgcttgaaggacattgtgctttaa
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integrated database retrieval system
