Pangasianodon hypophthalmus (striped catfish): 113528919
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Entry
113528919 CDS
T05759
Name
(RefSeq) pre-mRNA-processing factor 39-like isoform X1
KO
K13217
pre-mRNA-processing factor 39
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
phyp03041
]
113528919
Spliceosome [BR:
phyp03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
113528919
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
Suf
TPR_14
HAT_Syf1_CNRKL1_N
TPR_19
HAT_Syf1_CNRKL1_C
TPR_16
TPR_11
TPR_15
TPR_17
HrpB1_HrpK
Iml2-TPR_39
TPR_12
TPR_5
HAT
DUF5858
TPR_21
Motif
Other DBs
NCBI-GeneID:
113528919
NCBI-ProteinID:
XP_026773565
LinkDB
All DBs
Position
Unknown
AA seq
708 aa
AA seq
DB search
MAAEGAEAFSDNGEFINPSECEAPEVTNFPQPDLGVSEDMGGTDMADPSLAYSAPPVTGE
EEVEDRELPVDFERQWKLVNDNPQDFNSWTELLQYCEQEGNLRASRQALNAFLERYPLCY
GYWKKFADLERRAGHNHKAEEVCVQGLTVIPLSVDLWIHYINLLLGTLNMNLPESTQRIR
SVFEGALAAAGWDWHSDRLWDLYAEWEKEQGDLRAMTAVYDRVMRVPTQLYSTHYEKLKA
HLTSGPLQDVLSPEEYEKVQAEYRQIQIQAKKEGSDATAGEEEERPPGEDDPTNDGKYSE
EAVQKMQEMILASREEMYQQNEAEVRKRWNYEDAIKRPYFHVKPLDRAQLKAWHTYLDWE
MAEAEAAHAVTEGTSVEGQEGSEVKDGIAGHRRVQILFERCLIACALYEEFWDKYVHYLE
PRSLEEARNVYRRACEIHLPYKHSFHLQWAMFEERHGNISEAQRILEALERAMPGLAMVR
LRRAGLERRVGRLDKAESLLKEAVEENKDKPQLHAFYSIKLARFLHKLGKNPSRARAVLQ
EAIEISPDNSKLYLNLLDLELSGDLRPNGGGVQQCVSKALAAPLSSDSKILFSQRGLQFA
EDFGTTVQSVLSIYEEHQKLLNDLGAKKRGAENGDSDDPEKISKMDDGSAAPMQAIPPTM
PPVPPPPVMGGDMSGYGNYGNWYQQQQYGGYGGYSNPWNQYSQYYPPS
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
atggcggctgaaggcgcggaagcattcagcgacaacggggaattcataaacccgtcagag
tgtgaagcccccgaggtcactaactttccccagccagatttaggggtatctgaagacatg
ggaggaacagacatggcagatccatcattagcctacagcgcccctccagtgaccggagaa
gaggaagtggaggaccgagaactgccagtggattttgaaaggcagtggaaactggtgaat
gacaacccacaggatttcaacagctggactgaattattacagtactgtgaacaagagggt
aatttgagagcatctcgtcaggccctgaatgcattcctggagagatacccgctctgctac
ggctactggaagaagtttgcagatttggaaaggcgagcaggacacaaccacaaggctgag
gaggtatgtgtgcaagggctgacagtaattcctctcagtgtggatctgtggatacattac
attaacctcctgcttggcacactgaatatgaacctgcctgagtcgacacagcgcattcgc
agtgtgtttgagggtgctctggctgcggcaggttgggactggcactcagaccgcctgtgg
gacctgtacgctgagtgggagaaagaacagggagacctgagagccatgactgcagtctat
gatcgtgtgatgagagtgcccacgcagctctacagcacccactatgaaaaattaaaggct
cacttaacatcaggtcctctccaggatgtcctgagccctgaagaatacgagaaggtgcag
gctgagtacaggcagattcagattcaggctaagaaagagggatccgatgctacagctggt
gaggaagaggagaggccgcctggggaggacgatcccacaaatgatggcaaatattcggaa
gaggcagtgcagaaaatgcaggagatgatcttggccagcagagaggaaatgtatcagcag
aatgaggccgaggtcaggaagagatggaactacgaagatgcgattaagagaccgtatttc
catgtgaagcctttggaccgggcccagctgaaagcctggcacacatacctggactgggag
atggctgaagctgaggcagcacatgcggtcactgaggggacgagtgtggaaggtcaggag
ggctcagaggtcaaagacggcatcgctggccataggagagtgcagattctgtttgagcgc
tgcctcattgcctgtgcactctatgaggagttctgggataagtatgtgcattatctagag
ccacgcagtctggaggaggcacgcaatgtatatcgaagagcttgtgaaatccacctgccg
tacaagcacagttttcacttgcagtgggccatgtttgaggagagacacggtaatatctct
gaggcgcagcgtatactagaagctctagagagggctatgcctggcctggccatggtgcgg
ctccggagggcgggactagagaggagggtgggtcgtctggataaggcggagtcactgcta
aaggaggcagttgaggagaataaagacaagccgcaacttcatgccttttactccatcaaa
ctggcccgctttcttcacaaattaggcaagaacccatcgcgggctcgcgccgtgctgcaa
gaggccattgagattagtccggacaacagtaagctctacctgaatctgctggacctggag
ctatctggggatctgcggcccaacgggggaggagtccagcagtgtgtgagcaaagcttta
gctgcacctctctcatcagatagtaagatccttttctcccaaagaggcctgcagtttgct
gaggattttgggaccacagtgcaaagtgtgctgagtatctacgaggaacaccagaagctt
ctaaatgatcttggtgcaaagaagcgtggagcagagaacggtgatagcgacgatccggag
aaaataagtaaaatggatgatggatctgcagcacctatgcaagctatcccgcccactatg
ccccctgttcctcctcctccagtgatgggtggagatatgagtggatatggaaactatggc
aactggtatcagcaacagcagtatggaggatatggtggctactccaacccctggaaccag
tacagtcagtactaccctcccagttag
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