Pangasianodon hypophthalmus (striped catfish): 113529203
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Entry
113529203 CDS
T05759
Symbol
nedd1
Name
(RefSeq) protein NEDD1 isoform X1
KO
K16547
protein NEDD1
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
phyp03036
]
113529203 (nedd1)
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
phyp04812
]
113529203 (nedd1)
Chromosome and associated proteins [BR:
phyp03036
]
Eukaryotic type
Centrosome formation proteins
Pericentriolar materials (PCM)
Other PCM proteins
113529203 (nedd1)
Microtubules and associated factors
gamma-tubulin ring complex
113529203 (nedd1)
Cytoskeleton proteins [BR:
phyp04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Gamma-tubulin complex components
113529203 (nedd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR3_1st
Beta-prop_THOC3
Beta-prop_WDR5
Beta-prop_EML_2
WD40_Prp19
WD40_CDC20-Fz
WD40
Beta-prop_WDR36-Utp21_1st
WD40_WDHD1_1st
WDR55
Beta-prop_EML
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR3_2nd
ANAPC4_WD40
WD40_Gbeta
EIF3I
WD40_MABP1-WDR62_1st
Beta-prop_RIG_2nd
WD40_RFWD3
WD40_MABP1-WDR62_2nd
Beta-prop_WDR19_1st
Beta-prop_HPS5
Beta-prop_TEP1_C
Beta-prop_IFT140_1st
Beta-prop_VPS8
Beta-prop_Aladin
Beta-prop_NUP159_NUP214
Beta-prop_EIPR1
WDR90_beta-prop_4th
Beta-prop_IFT122_1st
eIF2A
NBCH_WD40
Beta-prop_WDR35_TULP_N
Beta-prop_SPT8
PEP5_VPS11_N
WD40_like
Beta-prop_WDR75_1st
Beta-prop_Vps41
Beta-prop_LRRK2
Beta-prop_ACSF4
Beta-prop_DCAF12
KNTC1_N
SdiA-regulated
Frtz
Ge1_WD40
Motif
Other DBs
NCBI-GeneID:
113529203
NCBI-ProteinID:
XP_026774041
LinkDB
All DBs
Position
Unknown
AA seq
678 aa
AA seq
DB search
MEEVTRLVSSGDCLKIWDSTSMSVVEQFNPHSASHPLAQVCWSSSNQYIVSASSIGDKLV
VTSLKSSPVPVMELAEGKKQTRVALNSTSQFLVSGGLDNTVNIWDLKTKRLHRSLKDHKE
EVTCVSFNGGDSYIASGSTSGDIILHSITTNLSSKAFGHGPNEPIHDLKYSLIKRSLLGS
VSDSGSVVLWDVNTQKELHTFEGAHKAPASGLAFSPANDLLFITVGLDKKIVCYDTSSKV
IFRSKQVESPLTAVDFTPDGAGLVVGSTQGRIYMYDLRNLSAPVKTTTAHKTSVTCIRFQ
HSNTRLKTSKTVSGKTSSSQSTKRISVKLGQNQQSGPPTPTSSVPAVPEQQPVSRGDGQA
HSLGSGGGSEVPSREAEGQQSLEKFNSVGRNSLSLDIFSPVTDGFKTHGFIGDTPTSRNG
GSADVFLREAEGQHSSDKFRVGRNSLDIFSPVRDDYKGHRFSDASSGKKDLDFLPQHGSA
QRKNPLGTPGARCYSPLSAVHTPPAIKEEEPVITSPTHTDTQNNMVEKTNYPRQNTMTTP
PASQCTHIQSVPSFNTPEPTQRREVPTQLTYDSPVSSSQPAAESAAGAAAGASGAVSSGA
PLTSVQMNFVRNMIHEALEDFRDTCHRDIINLQVEMVRQFYIQLNEIHGLIERYSVNESL
VEEIEKLKEENKRLRANY
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atggaggaggtgacccggttggtgtcatcaggcgactgtctgaagatctgggattccacc
tctatgagtgtggtggagcagttcaaccctcacagtgccagccatcctctagcacaggtg
tgctggagcagcagcaatcagtacattgtcagtgccagcagtataggagacaagctggta
gtgaccagcctgaagtcctcaccagtgccagtgatggagcttgcggaagggaaaaaacag
acacgagtcgcactaaattcaacatcacagttcttggtcagtgggggactggataatacg
gtcaacatctgggacctgaagacaaagagattacatcgcagcctcaaggaccataaggag
gaagtgacctgtgtatccttcaatggtggcgatagttacatagcatctggttccaccagt
ggggatatcatcctccacagcattaccaccaatctgtccagcaaagcctttggccatggg
cccaatgaacctatccatgacttgaagtactcactgataaagcggtctctcttggggagt
gtgtcagacagtggctccgtggtactgtgggacgtaaacacacagaaggaactacacacg
tttgaaggagcacacaaagctcctgcctcaggcctggccttttctccagccaatgacctg
ctctttattacggtggggttggataagaagattgtctgctatgacacttccagcaaagtt
atttttcgtagtaagcaggttgagtccccactcacggctgtagacttcactccggatgga
gcaggacttgtagtgggctccacccagggacggatctacatgtatgacctgcgtaatcta
agtgctcctgtcaaaaccaccactgctcacaagacctcagtcacgtgtatccgcttccag
cactccaacaccaggctaaagactagtaaaacagtctctggcaagacttcttcttcacag
tctaccaagagaatctctgtaaagctgggacagaatcagcagagcggtcctcctactcca
acctcctcagttcccgctgtccccgaacaacagccagtaagccgaggagacggacaggct
cacagcctcgggagtggaggaggttctgaggtgccatccagagaggctgaaggccagcag
agtctggagaagttcaacagcgtgggccgaaacagcctaagcctagacattttctcacct
gtaactgatgggtttaaaacacatggtttcattggtgatactccaacttcaagaaatgga
ggcagtgctgatgtgttcctcagagaagctgagggtcaacacagttctgataagtttagg
gtgggtcgcaacagcctggacattttctctcctgtccgagatgattacaaaggtcacaga
ttcagtgatgcctcaagtggaaagaaagatttagatttcttacctcagcacggttcagcc
cagcgtaagaacccgctgggtacacctggtgctcgctgctacagtcctctgtctgctgtc
cacacaccacctgcaatcaaagaggaggaaccagtgatcacatcacctacacacacagac
acgcagaacaacatggtggagaagactaattatccgaggcagaatactatgactacaccc
cctgcttctcagtgtacacacattcaatcagtgccttcattcaacactcctgagcccact
cagaggagagaagttccaacccagctcacctacgattcgccagtgagtagcagtcaaccc
gcagccgaatcagcagcaggtgcagcagcaggcgcatctggcgctgtcagtagtggagca
ccactcacctctgtccagatgaattttgtgcgcaacatgatccatgaagctctagaagat
ttcagagacacgtgccatagagatatcatcaatcttcaagtagaaatggtgcggcagttc
tacattcagctgaatgaaatccatgggctcattgagaggtactctgtgaatgagagtctt
gtggaggagattgagaagctgaaggaggaaaacaaacgactccgagccaattactaa
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