Pangasianodon hypophthalmus (striped catfish): 113529371
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Entry
113529371 CDS
T05759
Symbol
ddx1
Name
(RefSeq) ATP-dependent RNA helicase DDX1
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
phyp03041
]
113529371 (ddx1)
03016 Transfer RNA biogenesis [BR:
phyp03016
]
113529371 (ddx1)
Enzymes [BR:
phyp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
113529371 (ddx1)
Spliceosome [BR:
phyp03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
113529371 (ddx1)
Transfer RNA biogenesis [BR:
phyp03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
113529371 (ddx1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
SPRY
ResIII
CMS1
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
113529371
NCBI-ProteinID:
XP_026774327
LinkDB
All DBs
Position
Unknown
AA seq
740 aa
AA seq
DB search
MAAFAEMGVMPEIAQAVEEMDWLLPTDIQAESVPLILGGGDVLMAAETGSGKTGAFSIPV
IQIVYETLKDQQEGKKGRAAVKTGGAVFNKWQMNPYDRSPAFAIGPDGLCCQSREFKEWH
GCRSTQAVTKGKYYYEVSCHDQGLCRIGWSTAQAALDLGTDKFGFGFGGTGKKSHNKQFD
SYGEEFTMHDTIGCYIDLDSGHVSFSKNGNDLGLAFEIPQNLRRQPFFASCVLKNAELKF
NFGGEPFKNAPKEGFIALDQAPDGHVVKTTQTGSATVSQVKSSSTAPKALIVEPSKELAE
QTLNNVNQFKKYVDNPKLRDLLIIGGVAAKEQLSILESGVDIVVGTPGRLDDLISTGKLD
LSQVRFLVLDECDGLLTAGYTDFIMRVYNKIPQVTSDGKRLQVIVCSATLHSFDVKKLSE
KIMHFPTWVDLKGEDSVPETVHHVVVTVNPKNDRLWERLGKNHIRTDEVHAKDNTRPGAN
TAEMWSEAIKILKGEYTIRAIKEHKMDQAIIFCRTKIDCDNMEQYLIAQGGGPDKKGHQF
SCVCLHGDRKPNERKYNLERFKKKEVRFLICTDVAARGIDVHGVPYVINVTLPDEKQNYV
HRIGRVGRAERMGLAISLVAMEKEKVWYHVCPNRGRGCYNTRLKEEGGCTIWYNEKELLG
EIEDHLKCTITQCEPDIKVPVDEFDGKVTYGQRRAAGGGLYKGHVDILAPTVQELANLER
EAQTSFLQLGYLPNQLFKAF
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atggctgcgtttgctgaaatgggagtgatgcctgaaatcgctcaggctgtggaagagatg
gactggctgcttcccaccgacatccaagccgagtccgttcccctgatcctcggcggagga
gacgttctcatggctgctgagacaggaagtggcaaaactggggccttcagcatcccagtg
atccagattgtgtatgagactctgaaagatcagcaggaggggaagaaaggccgtgctgca
gtgaagaccggaggagcagtgtttaataaatggcagatgaacccatacgaccgaagccca
gcatttgctatcgggccggacgggctttgctgccagagcagagagtttaaggagtggcat
ggctgccgttccacccaggccgtgactaaaggaaagtattactacgaagtctcgtgccat
gaccaaggcttgtgcaggatcggttggtccactgctcaggcagctctggatctgggtaca
gacaagtttggcttcggcttcggagggacggggaagaaatcccacaataagcagtttgat
agttatggagaggagttcactatgcacgacaccatcggatgctacatcgacctggacagt
ggccacgtgtccttctccaaaaatgggaatgatctgggcttggcgtttgagattccccag
aacttgagacgtcaaccgttcttcgcttcctgtgtgcttaagaatgctgaactgaagttt
aattttgggggagagcctttcaaaaatgcccccaaagaagggttcattgctctggaccaa
gcgcccgatggccacgtagtcaaaaccactcagactggcagtgccacggtgagtcaggtc
aaatcaagctccactgcccctaaagctctgatcgtggagccgtcgaaagaattggccgag
cagaccctcaacaacgtcaaccagtttaagaaatacgtggacaatcccaaactacgagat
ttgctgatcatcggaggcgtggcagccaaagagcagctgtccattttggaaagcggggtt
gatatagtggttggcacacccggcaggctcgatgatctcatatccacaggaaaactcgat
ctgtcccaagtccgcttcctggtcctggatgaatgtgatggactgcttacagccggctac
accgacttcatcatgagggtctacaacaaaatcccccaggtcacctctgatggaaagaga
ctgcaggtgattgtgtgctcggccaccctgcactcgttcgatgtgaagaaactgtcagag
aagatcatgcacttccccacgtgggtggacctgaaaggtgaagactccgtgcctgagaca
gtccatcatgtggtggtgaccgtcaaccccaaaaacgacaggctgtgggaaaggctgggc
aaaaaccatatccggactgatgaagtgcacgcgaaagacaacacgcggcctggagccaac
actgcagagatgtggtcagaggcaatcaaaatcctgaagggcgagtacacgatccgtgca
attaaggagcacaagatggaccaagccatcatcttctgcaggaccaagattgactgcgac
aacatggagcagtacctgatcgcacaaggaggaggtcctgataagaaagggcatcagttc
tcatgcgtttgtcttcacggtgacaggaagcccaacgagcgcaaatacaacttagagcgg
ttcaagaaaaaggaggtgaggtttttgatttgcacagacgtagcagccagaggaatcgac
gtccacggcgttccatacgtcattaatgtgaccttgccggatgagaaacagaattatgtg
catcgcatcggaagagtgggcagggcggagaggatgggtctggccatttctctggtggcc
atggaaaaggagaaggtatggtatcatgtttgtcctaacagaggccgaggctgctataac
accaggttaaaggaggaaggaggctgcactatatggtacaacgagaaagagctgttggga
gaaatcgaagaccacctgaagtgcaccattactcagtgcgagccggacatcaaagtcccc
gtagacgaatttgatggcaaggttacttacggccagcgtcgagctgctggaggtggtctc
tataagggccatgtggatattttggcccccacagtacaggaactcgctaacctcgagcgg
gaggcgcagacatctttcctgcaactgggctacctccccaatcagctcttcaaagctttc
tga
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