Pangasianodon hypophthalmus (striped catfish): 113529400
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Entry
113529400 CDS
T05759
Name
(RefSeq) CCR4-NOT transcription complex subunit 7
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113529400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phyp03019
]
113529400
Messenger RNA biogenesis [BR:
phyp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
113529400
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
113529400
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
113529400
NCBI-ProteinID:
XP_026774381
LinkDB
All DBs
Position
Unknown
AA seq
286 aa
AA seq
DB search
MPAATVDHSQKICEVWASNLDEELKRIRQVIRKYNYIAMDTEFPGVVARPIGEFRSNADY
QYQLLRCNVDLLKIIQLGLTFMNEQGEYPQGTSTWQFNFRFNLTEDMYAQDSIELLTTSG
IQFKKHEEEGIETLYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILSNSKLPEEEVD
FFEILRLFFPIIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFK
MREMFFEDHIDDAKYCGHLYGLGSGSSYVQNGTGNAYEEEANKQQS
NT seq
861 nt
NT seq
+upstream
nt +downstream
nt
atgcccgcagctactgtggatcatagccaaaaaatatgtgaggtttgggctagtaacctg
gatgaagagctgaaaaggatccgccaggtgatccgaaaatacaactacattgcgatggac
acagagtttccaggtgtagttgctaggccaattggagagttcagaagtaatgcagactac
cagtatcagctcttgcggtgtaatgttgatttgttgaagattatccagcttggccttacc
ttcatgaatgaacagggtgaatatccacaaggaacttcaacatggcagttcaacttcaga
tttaacctcacggaagatatgtatgcacaagattcaattgagctactgactacatcaggt
atccagttcaaaaagcatgaagaagaaggcattgagacactatattttgcagagctcctc
atgacttcaggtgtggtgctctgtgaaggggtcaagtggctgtcgttccatagtggctac
gactttggatacttgatcaaaatcttgtccaactccaagctgccagaggaagaagttgac
ttctttgagatacttcgtttatttttccccattatctatgatgtgaaatacctcatgaag
agctgtaaaaacctgaagggtggcctgcaggaggtagctgagcagctggaactggagagg
attgggcctcagcatcaggcaggctcagactctctgctcacaggaatggcgttctttaag
atgagagagatgttttttgaagatcatattgatgatgctaagtactgtggtcatttgtac
ggactgggctccggttcatcctacgtccagaacggcaccggcaacgcctatgaagaggag
gccaacaagcagcagtcatga
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