Pangasianodon hypophthalmus (striped catfish): 113529486
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Entry
113529486 CDS
T05759
Symbol
rtcb
Name
(RefSeq) tRNA-splicing ligase RtcB homolog isoform X1
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
phyp03016
]
113529486 (rtcb)
Enzymes [BR:
phyp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
113529486 (rtcb)
Transfer RNA biogenesis [BR:
phyp03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
113529486 (rtcb)
Prokaryotic type
tRNA splicing ligases
113529486 (rtcb)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
113529486
NCBI-ProteinID:
XP_026774506
LinkDB
All DBs
Position
Unknown
AA seq
505 aa
AA seq
DB search
MSRSYNDELQFLDKIDKTCWRIKKGFVPNMQVEGVFYVNDALEKLMFEELRNACRGGGLG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMSDPTAVVSPGGVGFDI
NCGVRLLRTNLDEGDVQPVKEQLAQALFDHIPVGVGSKGVIPMSAKDLEEALEMGMDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSSKAKKRGLPQLGTLGAGNHYAEIQVVDEIYND
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDNIVVNDRQLACARIGS
PEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFSKVFSTTPDDLDMHVIYDVSHNIAKVEE
HMVDGKQKTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHDAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgctcttacaacgatgagctgcagtttttggacaagatcgataagacatgctgg
agaatcaagaagggattcgtcccaaacatgcaggtggagggcgtcttctacgtcaacgat
gcgctggagaagctgatgttcgaagagctgcgaaacgcatgtcgtggaggaggtctcggt
ggatttctgcctgctatgaagcagatcggcaacgtggcggctctgccgggaatcgtgcat
agatctataggcctgcctgatgttcactccggatatggctttgcaattgggaacatggct
gctttcgacatgagtgaccctacggcagttgtctcgccaggtggtgtaggatttgacatt
aattgtggcgtgcgtctgctgagaaccaacctggatgaaggagatgtgcagccggtgaag
gaacagctggctcaggctctctttgaccacatccctgtaggagtggggtccaagggcgtc
attcccatgagtgccaaagatttggaggaggccctggagatggggatggactggtctctg
agggagggctatgcctgggccgaggataaagagcactgcgaagaatacggccgaatgctg
caggccgacccaaacaaggtttcctccaaggccaagaagagaggactgccacaacttggg
acactgggagcagggaatcactacgccgagatccaggtggtggatgagatctacaatgac
tacgcagccaaaaagatgggcatcgaccacaagggccaggtgtgtgtgatgatccacagc
gggagccgtgggctgggacatcaggtggccacagacgctttggtggccatggagaaggcg
atgaagcgcgataacatcgtggtaaatgatcggcaactcgcttgtgcccgcatcggttct
cctgaaggtcaggactacctgaagggcatggcggctgcaggcaactacgcctgggtcaac
cgctcctccatgaccttccttacacgccaggccttctccaaagtgtttagcaccacacct
gatgatctggatatgcatgtgatctatgacgtgtcccataacattgctaaagtagaggag
cacatggtggacggtaaacagaaaacactgctggtgcatcgtaagggctcaacacgggct
ttcccccctcatcaccccctcattgccgtcgactaccagctgactggtcagcctgtgctg
attggtggaacaatgggcacctgcagctacgtgttaacgggcactgagcagggcatgact
gaaacttttggcaccacctgccatggcgcaggtcgagcactgtcccgagctaaatcccgc
aggaatctggactttcaggacgttttggataaactggccgacatgggcatcgccatcaga
gtggcttcaccaaaactggtcatggaggaggccccagaatcctacaaaaatgtaacagat
gtggtgaacacgtgccatgacgccggcatcagcaagaaggccatcaagcttagacccatt
gctgtgattaagggttaa
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