Pangasianodon hypophthalmus (striped catfish): 113529580
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Entry
113529580 CDS
T05759
Symbol
myo5c
Name
(RefSeq) unconventional myosin-Vc isoform X1
KO
K10357
myosin V
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp04814
Motor proteins
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09140 Cellular Processes
09142 Cell motility
04814 Motor proteins
113529580 (myo5c)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phyp03019
]
113529580 (myo5c)
04131 Membrane trafficking [BR:
phyp04131
]
113529580 (myo5c)
03029 Mitochondrial biogenesis [BR:
phyp03029
]
113529580 (myo5c)
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
phyp04812
]
113529580 (myo5c)
Messenger RNA biogenesis [BR:
phyp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Cargo complex
113529580 (myo5c)
mRNA cycle factors
P-body specific factors
113529580 (myo5c)
Membrane trafficking [BR:
phyp04131
]
Others
Actin-binding proteins
Myosins
113529580 (myo5c)
Mitochondrial biogenesis [BR:
phyp03029
]
Mitochondrial quality control factors
Mitochondrial dynamics
Retention of mitochondria
113529580 (myo5c)
Cytoskeleton proteins [BR:
phyp04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Myosins
113529580 (myo5c)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Myosin_head
DIL
IQ
Csm1_N
ATG16
nSTAND3
AAA_16
AAA_22
Motif
Other DBs
NCBI-GeneID:
113529580
NCBI-ProteinID:
XP_026774653
LinkDB
All DBs
Position
Unknown
AA seq
1748 aa
AA seq
DB search
MALSELYTKYNRVWVPDAEQVWKSAELLRDYTPGDPALHLQLEDGAVIQYPVEVDGQLPP
LRNPDILVGENDLTALSYLHEPAVLHNLRVRFVDSKIIYTYCGIILVAVNPYKQLPIYGD
AVIRAYSGQNMGDLDPHIFAVAEEAYKQMARNNKNQSIIVSGESGAGKTVSARYAMRYFA
MVSKSSSNTRVEDKVLASNPITEAIGNAKTTRNDNSSRFGKYTEISFDQRYQIIGANMRT
YLLEKSRVVFQSENERNYHIFYQMCACADQPQFKSLRLLSADKFNYTCMGGETKIQGVDD
RADMAETCRTFTLLGLKNDFQSDVFKMLAGIMHLGNVVIKAVGSDQSSISSTDSHLAVFC
DLLEVRGEDMCRWLCHRRIVLASETVIKPQPRERAINARDALAKHLYAYLFDCIIHRINQ
ALRFPGKQHSFIGVLDIYGFETFDVNSFEQFCINYANEKLQQQFNLHVFKLEQEEYMKED
IPWTLIDFYDNQPVIDLIEAKMGILDLLDEECLFPQGTDNNWLQKLYNYLSSKPMFEKPR
LSSEAFVIHHFADRVEYQCKGFLEKNRDTLYEVLVDIMRASKFPLLADFFKEEDQNSVHT
VKGVKVKAARPGVKPANKQLRTTVGDKFRSSLYLLMETLNATTPHYVRCIKPNEEKLPFE
YDSKRVVQQLRACGVLETVRISAQSYPSRWTYIEFYSRYSILMSQAELRLGEKKQTCRIV
LQRLIPDSNQYKFGRTKIFFRAGQVAYLEKLRLDYLRTACVTIQKHVRGWTQRRRYLRMR
QAAIIIQQYIRGKRQIRRMVTAAAIKQAWAAVVIQRHCRGYLVRRLYQLVLVATVTIQAY
TRGWIARKCYKKMVEEHKAMVLQKYARAWLVRRRFQTMRRLVLNVQLSYRVQQLRKKLEE
QNKENRGLMERLTSLANAHAQGLDRVQSLELELSKAANERLSVEEREKKSKEETNQVIVQ
LQDERDKVKLENQALQMKLKDSIQQMRDNFEELKKKLIEDLEREERLRKVAEHSSELQKE
DLDKEIAALKEENRRLRENKIQLQAQAEENTQINKELQEQLGQLTKHVKVIPELHKEINS
LQNEKIEADRKLREQTEQTRAKMNMITRQLLGETKEEEIILRLKKEATEAAADEGDVLFA
FNGLQNATRLVETHLREQREGYESKLEALVFKNDHLSRENQKLQALFQEKSDVNHSIGQE
VARLTAENMVIPELKQQVTELQRHKQELETQLEEQRTEMTENNIRVSNELQRKLEEESSQ
RRLLEERYRESEREREEMEKRLEELEEKIEHLKRLQQTDNEAKNKLRQETSRLTAENMDF
EEQLDTKDRTIKRLQDQIKALQAPVKVSEKAGPTVPKEYLGMLEYKKEDEGRLVRTLILE
LKPRGVVVNMIPGLAAHLLFMCIRHADYLNDGEKLKSLMHAIITGIKQVTTDHQENFEIL
SFWLSNTYYLLNCLKQYSGEEEFIKHNTPRQNKNCLQNFDLSDHRQVFSDLAIHIHHQFI
NVMEDALFPMIVPGMLEHESLQGISSMKPTGFRKRSNSMLGDGLREGEGQSFSISSILQL
LSDFHSCMAQQGMDQQLQGQALRQLFYLIGATSLNSILLRKDLCSCRKGMQIRCNISYLE
EWLRDKGLQGYNVMETLGPLSQAAWLLQVNKTTDDDAAEIQQRCHELSPVQIVKILNSYT
PIDDFEKRVAPSFVRKVQALLQDREGSTQLMMDAQYRFQVTFPFCPSTQALELLQVPNSL
HLSFVTRI
NT seq
5247 nt
NT seq
+upstream
nt +downstream
nt
atggcgctgtcggagctgtacactaagtataacagagtttgggtgccggacgcagagcag
gtgtggaagtcagctgagctcctgagagactacacacctggagatccagctctacacctg
cagctggaggatggagctgtgatccagtacccagtggaagtggatggtcagttacctccc
ctccgtaacccagacatcctggtgggagagaatgacctaaccgctctgagctatctccat
gaaccggctgtgctgcacaacctgcgggtcagatttgtggactctaaaatcatctacaca
tactgtggcattatcctagtggcagtaaacccatataaacagctccccatttatggagat
gcagtcatccgcgcttattctggccagaacatgggagatctggaccctcatatatttgct
gtggcagaagaagcttataaacagatggcaaggaacaacaagaatcagtccatcatagtc
agtggggagtctggagcagggaagactgtgtctgctcgctacgctatgagatactttgca
atggtcagcaaatctagcagcaacactcgggtggaggacaaggttttggcatcgaacccc
atcactgaagcaataggtaatgcaaagaccaccaggaatgacaacagcagccgatttggg
aaatacactgaaatcagctttgaccagaggtaccagatcatcggtgctaacatgaggacg
taccttctagaaaagtctagggttgtttttcagtcagagaatgaaagaaactatcacatc
ttctatcagatgtgtgcttgtgcagaccaaccacagtttaagagcttgagactgttgagt
gcagacaagtttaactacacctgcatgggaggggagacgaagatccaaggcgtggatgat
cgcgctgacatggctgaaacctgccgcactttcactctactgggactaaagaatgacttt
cagagtgatgtgttcaagatgttggcagggattatgcacttgggcaatgtggtgatcaaa
gcagtcggctcagaccagtcatccatcagttctactgactctcacctggctgtgttctgt
gatctgcttgaagtcagaggagaagatatgtgtcgctggttatgtcataggcgtattgtt
ctggcatctgagactgtgatcaaaccgcagccaagggaacgtgccataaatgcccgtgat
gcactggccaagcatctttacgcttatctctttgactgtatcatccacaggattaaccag
gccctgcgttttcctggaaaacaacactcttttattggagtgctggatatctatggattt
gaaacctttgatgtgaatagcttcgagcagttttgcatcaactatgccaatgagaaacta
caacaacagttcaacttgcacgtgtttaaactagagcaagaggagtacatgaaggaggac
atcccctggaccctgattgacttctatgacaaccaaccagtcattgatcttattgaagcc
aaaatgggcattctggacttgctggatgaggagtgtctgtttcctcagggtactgataac
aactggctgcaaaagctttataattatctgagctcaaagcctatgtttgagaaacctcgt
ctatccagtgaggcgtttgtgatccatcactttgcagaccgggtagaatatcagtgtaaa
ggtttcttggagaagaatagagataccctctatgaagtgctggtggacataatgagagcc
agcaagtttcctctcttggcagatttctttaaagaagaggatcaaaattcggtgcataca
gtgaagggtgtcaaagtgaaagcagcacgacctggagtcaaaccggccaataagcaactt
agaaccactgtaggagataagtttcggagttcattgtatctgttaatggaaactcttaat
gccactacaccacattatgtccgctgcattaagcctaatgaggagaagctgccatttgaa
tatgactcaaagcgtgtggtgcagcagctgcgggcttgtggagtactagagactgttcga
attagtgctcagagctacccatctaggtggacctacattgagttctacagccgttacagt
attctgatgagccaggcagagctcagactgggggagaagaagcaaacatgtagaatagtg
ttgcagaggctcatccctgactctaatcagtataagtttggacggaccaaaatcttcttc
cgggcaggacaagtggcgtatctggagaagctgcgtttggattatctgcgcactgcatgt
gtgaccatccagaagcatgtgaggggctggactcagagacgcaggtatctgcgcatgaga
caagccgccatcatcatccagcagtacatccgtggcaagaggcagatcaggcgcatggtt
acagcagcagctataaagcaggcctgggcagctgtggtcatccagaggcactgtcgtggt
tatcttgtacgccgactttaccagcttgtactggtggctacagtcactatacaggcatat
accaggggatggattgcccgcaagtgctacaaaaagatggtggaggagcataaagctatg
gttctacagaagtatgctcgggcctggctggtgcgtcgccgcttccagaccatgcgccga
ctcgtcttaaacgtgcagctctcttacagagtccagcagctgcgcaagaaactggaggaa
cagaataaagagaaccgtggtctgatggagagactgaccagtctggccaacgctcatgct
cagggattggacagagtgcagtccctggagttggagctgagcaaagcagccaatgagagg
ctatcagtggaagagagagagaagaagagtaaggaggaaaccaatcaggtgattgttcag
cttcaggatgaaagggataaagtcaagctggagaatcaggctctccagatgaaactcaaa
gattccatacaacaaatgagagacaattttgaagaactgaagaaaaagctcatagaggac
ctagagagagaagagaggctgcgaaaagtcgcagaacacagcagtgagctgcagaaggag
gacttggataaagagattgcagcactgaaggaggagaatcgcaggctgagggaaaacaag
atccaactacaggctcaggctgaggagaacacacagatcaacaaagagctccaggagcag
cttggtcagctcaccaaacatgtcaaggtgataccagagttacataaggagattaacagc
ctccaaaatgaaaaaattgaagcagacagaaagttgagggaacaaactgagcagaccaga
gcaaaaatgaatatgattactagacagcttctgggtgagacaaaagaagaggagatcatt
ctcaggttgaaaaaagaagctacagaagctgctgctgatgagggagatgtgctgtttgca
tttaatgggctgcaaaacgccaccaggctggtggagactcatttacgggagcaaagggaa
ggttacgaaagtaagctggaggcactggttttcaaaaatgatcacctgagtagagagaac
cagaagctacaagccctgtttcaggagaagagcgatgtcaatcacagcattggacaggag
gtggcccggctcactgctgaaaacatggtgatccccgaactgaagcaacaggtaacagag
ttacagcgtcacaaacaggagctggaaacacagctagaggaacaacgcactgagatgact
gaaaataatataagggtatccaatgagcttcagcgtaagcttgaagaggaaagctcacaa
agaaggcttttggaggagaggtacagagaaagtgagagagaaagggaggagatggagaag
aggctggaggagctagaggagaagatagagcaccttaagagactacagcaaacagataat
gaagccaagaacaaactcagacaggagacctcacgccttacagccgagaacatggacttt
gaagagcaattagatacgaaagacagaaccataaagaggctgcaggaccaaatcaaagct
cttcaggcaccagtgaaagtcagcgagaaagctggaccaactgttccaaaagaatacctt
ggcatgctggagtataagaaagaggatgaaggcaggcttgtgcggacattaatacttgag
ctgaagccgaggggagtggtggtgaatatgatccccgggttggcggcccatctgctcttc
atgtgcattcggcatgctgactatctcaatgatggagaaaagctaaagtccctcatgcat
gccatcatcactggaatcaaacaggtcaccacggaccatcaggaaaactttgagattttg
tccttctggctctccaacacatactacctgcttaactgcctcaaacagtacagtggagaa
gaagagttcatcaagcacaatacacctcggcagaataagaactgcctgcagaactttgac
ctgtcagatcacagacaggtcttcagcgatcttgccattcacatccatcaccagtttatc
aatgtgatggaggatgccctgttccctatgattgtccctgggatgctggagcatgagagc
ctgcagggcatctcaagcatgaaacccacaggtttccgtaagcgctccaacagcatgctg
ggagatggactcagagagggcgagggccagagcttcagcatctcctccatcttacagctg
ctgagtgacttccacagctgcatggcacagcaaggcatggatcagcagctgcagggtcag
gccctccgccagctcttctacctgattggagccacctcacttaacagcatcctcctccgc
aaggacctctgctcctgccgcaagggcatgcagatcaggtgtaatatcagttacttggaa
gagtggctgagggataaaggccttcagggttacaatgttatggagactctggggccgctg
tcccaggctgcctggctcctgcaggtgaacaaaaccaccgacgatgatgcagctgagatc
cagcagagatgccacgagctctcaccagtccagattgtgaagatcctcaactcgtacact
ccgattgatgactttgaaaagcgagttgcgccgtcttttgtgcggaaagttcaggcactg
ctacaggatcgtgagggctcgactcaattgatgatggatgcacagtatcgcttccaggtt
actttccctttctgtccatccacacaagctctggagctcctgcaggtgcccaacagcctt
cacctgagctttgtcacccgcatatga
DBGET
integrated database retrieval system
