Pangasianodon hypophthalmus (striped catfish): 113529607
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Entry
113529607 CDS
T05759
Symbol
rora
Name
(RefSeq) nuclear receptor ROR-alpha isoform X1
KO
K08532
RAR-related orphan receptor alpha
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
phyp03000
]
113529607 (rora)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
phyp03310
]
113529607 (rora)
Transcription factors [BR:
phyp03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
113529607 (rora)
Nuclear receptors [BR:
phyp03310
]
1. Thyroid hormone like
1F. RAR-related orphan receptor
113529607 (rora)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Motif
Other DBs
NCBI-GeneID:
113529607
NCBI-ProteinID:
XP_026774693
LinkDB
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Position
Unknown
AA seq
519 aa
AA seq
DB search
MESPPDPTSEPGKSASEAASAVRESPLNLDALRKAEHQAPVRRHSCSSTNRGISVTKKTH
TSQIEIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNAAYSCPRQKNCLIDRTSRNR
CQHCRLQKCLAVGMSRDAVKFGRMSKKQRDSLYAEVQKHRLQQQQREQQQQPGEAEPLTP
TYGLSANGLTELHDELSGYMDGHTADGTKPDSGVSSFYLDIQPSPDQSGLDINGIKPEPI
CDFTPASGFFPYCSFSNGETSPTVSMAELEHLAQNISKSHMETCQYLREELQQMTWQAFL
QEEMESYQNKPREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSLEVV
FVRMCRAFDPQNNTVYFDGKYAGPDVFKSLGCDDLISSIFEFGKNLCSMHLSEDELALFS
AFVLMSADRSWLQEKVKVEKLQQKIQLALQHVLQKNHREDGILTKLICKVSTLRALCSRH
TEKLTAFKAIYPDIVRTHFPPLYKELFGSDFEQSMPVDG
NT seq
1560 nt
NT seq
+upstream
nt +downstream
nt
atggagtcgcctcctgatccgacgagcgagccgggtaagagcgcctccgaggcggcgagc
gcggtcagggagagcccgctgaacctggacgctctgcggaaagccgagcaccaagcgccg
gtgcgcagacacagctgctccagcaccaacagaggtatttcagtaacaaagaagacacat
acttctcaaattgaaattattccctgcaagatctgtggagacaaatcatcaggcatccat
tacggtgtgataacatgtgagggctgtaagggtttcttcaggaggagtcagcagagcaat
gcggcatattcgtgcccacgtcaaaagaactgcctgatcgaccgtaccagccgaaaccgc
tgccagcactgcaggctgcagaagtgtctggctgtgggcatgtcacgggacgcggtgaag
ttcgggcgcatgtcaaagaagcagcgggacagcctgtacgctgaagtgcagaagcaccgt
ctccagcagcagcagagggagcagcagcagcagccaggcgaggctgagccactcacgccc
acctacgggctctcagcaaacggcctcactgagctgcacgatgagctgagcggttacatg
gacggccacacggccgatggcaccaagcctgactcaggcgtcagcagcttctacctggac
atccagccctcacccgaccagtccggtctggacatcaacggcatcaagcccgagcccatc
tgcgacttcacgccagcctcaggcttcttcccgtactgctccttcagcaacggcgagacc
tcccccaccgtctccatggccgagctagagcatctggcccagaatatctccaagtcccac
atggagacatgtcagtatctgagagaggagctgcagcagatgacctggcaggccttcctg
caggaggagatggagagctaccagaacaagcccagagaagtcatgtggcagttgtgtgcc
ataaaaatcacagaggccatccagtacgtggtggagttcgccaagcgtattgatggtttc
atggagctctgtcagaatgatcagattgtgctgctcaaagcaggctctttggaggtggtg
tttgtcagaatgtgtcgtgcctttgaccctcaaaacaacacagtctatttcgatggaaag
tatgctggccctgatgtgtttaagtcattaggttgtgacgacttgatcagctccatcttt
gagtttgggaaaaacttgtgttctatgcacctgtctgaggacgaactcgccctattctca
gcatttgtgttgatgtctgcagaccgctcctggctccaggagaaagtgaaggtggagaag
ctacagcagaagatccagctggcccttcagcatgtcctgcagaagaaccacagagaggat
ggcatactaacaaagttaatatgcaaagtgtcaaccctgcgagcgctgtgcagcaggcat
acagagaagctgaccgctttcaaagcaatatacccggacattgtgcgtacccacttcccg
cccttatacaaggagctctttggatcagactttgagcagtccatgcctgtggacgggtag
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