Pangasianodon hypophthalmus (striped catfish): 113529633
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Entry
113529633 CDS
T05759
Symbol
spg11
Name
(RefSeq) spatacsin isoform X1
KO
K19026
spatacsin
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
phyp03400
]
113529633 (spg11)
DNA repair and recombination proteins [BR:
phyp03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
113529633 (spg11)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Spatacsin_C
Motif
Other DBs
NCBI-GeneID:
113529633
NCBI-ProteinID:
XP_026774760
LinkDB
All DBs
Position
Unknown
AA seq
2386 aa
AA seq
DB search
MKSRPEARVHSALEVALVADSGLCADVEHTVKARMAAGCSLLCCLNVDGRLMLSDVSEAA
GPVPVLEDSCTDFLWEMSTEQNKVDKPRLLTMRPACNLRLHEIHSERQLTSVSECTTDRL
LQLVNKDLNGSKLASMKLLSFMDSLCYFLLNGCVLVHLRWQEGFAEPELLSSCVLSLPSE
TQEIFTDYQLCKGILFVLASHGFIYAFDSADGKHLATVDLPAYYTSGQRDAEHVESLSSF
CLLHISQDLSTAVAATRQNQALAVDLNDYFRIHINHLHCQQDPRPLPLIPTKPCDQDSIA
NSTYSQSVLGTHFQTDQSWEARLALLYKQAKAPVSPAKRLPWYKDLPRSECRQAAATAKL
SQSTLSPGGAVMSFALPERTTPSLLIVSEFSAVLSFTSPGNSSTTLAYWDLETQNVTYHY
IDVPALPVCWSEQEHLSLILKASGMSLVLFTVSQEELLNRLMVFGSAGVVDSLCHINAWG
RCSMPIHSLQAGLKNRQLDMVDFFLKSKENILCPPTSYSLPEQSSTATQMQLKNVQDLCP
ALDLLQSAIRDTNTEAQSRQFCEQLLSMTLNFLNTQIRVILTSTPELDANLHECMKILNG
YISELRTYLRRYPWLEGSESQTPASDTASAPDTAIEEEWETRSVEEVVQCAVLNRQLPRA
QAYLRKRKCPEQKLEELRKTGLRLAFTCLTHRDVQQATTLLTNMGFNVKEQLRNICVYTA
DRDLRAFMVEELKRLNHLSTEDLQKVEFIKEIENLCSRPATRCSKPFDKKRVLQKSQLEA
ESRKPLQEILHEPLSCSVQSLVGSVRLDWVRHWDNDTQKSVLLSRIPDHLLGSCDPAVLW
SYLTSLHDQDRVTAWLTHIATQDCESTAASKWPALTAAVVDGNTYCSDYMKDQILDMLAR
QEVFVQSEMSDFEQLLWRLGQARGVMRDIDGPPVPQFRASKGQDFHTCFIQHCLENNLHY
LLYTYLQHYRLTPSNCPAVGDRDLYESYPWFEMMVKLQSIARDLKNPERVFQASLTSAQV
LLPGSQASVSSMLLEGHSLLALSTIMFAPGGIDQVVKGGDEGQDVLSRVEPQLLRMALSA
YPKLKAALFPQTGPRVTSVCDVSIYHLMQSLHPLDPYRLFGWQSANTLGTAETSSELPHF
SSSHLVNKYAIIENLDFLYYLQHGRPSFAYGIFIIQHLAGSGSAKLQMTRAAEQAYSLGL
LNFSNPSIAAACVCFFELLGVCSLKLRVDLKALNLILKLWSKNCEETSMALLKQSLVDKV
DKMVAAERQTLEELLLHLEGAVRDCVESRGISRSSYEAGQEWALPVQFCHLHDLPLSTQY
LQDCATDGQWLNFLLFVQIHHYPPQQVRYLAASFSPGLQAHLLLAFQDLQLVHSQQALEG
QRDSLCSLMKEEDSECPKDLFQVLFRSQEQPSPWQYLLAEAVTLHSPPLTVLAACHQDAE
LLQCLCVWILTSVDDDIAQEVTSHINESPGHHMWNLYDLSILWKILLQKCKIRPLIRGFQ
LFQRESPLIHMLQMYELCYDYKNYQGAKDKLLEFQKCLLNLRSSGSVLGLECLPVQWVEA
QASVLLLTLLQQCGTQYELCRLLQLLADMERMLKSNGPDFKKLSQLSQILADTPVPLSPC
LLENYTTKSLQRECQRMLEELQDLALFCQARKVAELAGLPVDRLIINELLRDLKVLKATR
QWERQETRLAFWRKCQEQFKADCIGAESACQFFLSQAEDPVQRDTELLQVQEQCLLLAFA
AHWLCQCSPPALERLAELEKRQWEWRIRRMVLTTALEQQSLFTPATGPDAFDSLLKEYSF
SKMAILDDQAYLNIEGLPTTEEGCLLEEEERKALSTLTGQLLDEGSVHEASRVCRYFELL
HRDVWLVLQCRGLACGEIQPGLQELLGSDRECRRSLPSCSSTGSLSSFVVVSSPEDQVLS
QLQLLVDQCRHGKSYCKQVLSLYELSKELCCSYSEISSEEPEAVLRKVLLSQQPERYKKA
QAFISVQGLQPDSVAQLITSTVLEGLLASSQDRETAERHIYSPSEGKEAFLQLAKLCGDP
NLVGIKLLDIITTVSLAELGCTVELLILAHDCFSLTCNMEGIVKVLQAARHLSHQHLAHG
ERYGLLVRLLTGIGRYNEMTYVFDLLNQNHRFEMLLRKKVESNTRLKTALLDYIKRCLPG
DSEKYNMVALCFSMRREIGENHEGAARTQLKLIESQPWVVTPELKSGLEKVLFLLKDAAE
SYSKDSCMRQALRCVKMAKLITLQLHFLNHGQDLRVVNLRPSELLNAMMALPRCYQSFIV
AEAYDYSPDWAEILYQKVILKGDFSYLEEFKLHRPLPASLFEEISKKLMVNKPPNTVSQN
LKKLLQYCENVYTHYKLAYEHKFVDVANTLLQDSKTSSYLNDRLSS
NT seq
7161 nt
NT seq
+upstream
nt +downstream
nt
atgaagagcaggcctgaggcgcgagtacacagtgcgttagaagtagctcttgtagctgac
agtggcctgtgtgcagatgtcgagcacacggttaaagccagaatggctgctggctgttca
ctgctctgctgtctgaatgtggacggcagactgatgctcagtgatgtttctgaagctgct
ggtccggtgcctgtgcttgaagactcctgcacagactttctctgggagatgtccactgag
caaaataaagtggacaagcccagactcctgactatgagaccagcctgtaatcttagactt
catgagattcattcagaaaggcagctgacgtcagtgtccgagtgtactacagacagactc
ctgcagcttgtcaataaggacttaaatgggagtaagctggcctctatgaaactgctgtca
ttcatggacagcctctgttacttcctgctgaatggatgtgtcctggtacatcttcggtgg
caggaaggctttgctgagccagagctgctgtcttcctgtgtccttagcctgccttctgaa
actcaggaaatattcactgactaccagctctgcaaaggcattctatttgtgttagcaagc
catggattcatatatgcctttgacagtgcagatgggaagcaccttgctacagtggatctc
cctgcatactacacatcgggacagagagatgcagagcatgtggaatctctctcttccttc
tgccttctccacatttcacaagacctcagcacagctgtggctgccaccagacaaaaccaa
gcactggcagttgatctcaatgattatttcaggattcacataaatcatttgcactgtcag
caggaccccagacctcttcctctcatacccacaaaaccttgtgatcaggacagcattgcc
aactcaacttacagtcagtctgtactgggtacccacttccaaaccgatcaatcatgggag
gcaaggctggcattgctctataagcaagcgaaagctccagtttctccagctaagcgactg
ccatggtacaaagacctccctcgctctgagtgccgtcaagcagcggccaccgccaaactc
agtcagtccactctgtcaccagggggtgctgtgatgtctttcgctctgcctgaacggacc
acgccgagcctgttgatagtctccgaattttcagcagtgcttagctttacctcacctggt
aacagcagcacaaccctggcctactgggacctggagactcagaatgttacatatcattac
attgatgtgccagccttgcctgtttgctggtcagaacaggaacacctctctctgattctg
aaagcatcaggcatgtctttggtgctgttcacggtttctcaggaggagctgctaaacaga
ttgatggtgtttggaagtgctggggtggtggactcactgtgccatattaatgcttgggga
cgctgttcaatgcccatccattccctgcaggcaggactaaagaatcggcagctggacatg
gtagatttcttcctgaagagtaaggagaacattctctgcccacccactagctacagtctg
cctgagcagtcatccaccgcaacgcagatgcagctgaaaaatgttcaggatctgtgtcca
gcattggatctgcttcaatctgctatcagagacacaaacaccgaggcacagagtcgacag
ttctgtgaacagctgctcagcatgacactaaacttcctcaatacacaaatcagagtcatc
ctaaccagcactccagagctggatgctaacttgcatgagtgcatgaagatcttgaatggt
tatatctctgaactgcgtacctatttgaggaggtacccatggctggaagggagtgagagt
cagactcctgcctcagacactgcctctgcccctgatacagccattgaggaagagtgggaa
acacgttccgttgaggaggttgtccagtgtgcagttttaaacaggcagctcccacgtgca
caggcatatctgcgcaagcgcaaatgtccagagcagaagctggaggaactgaggaaaaca
ggcctgagactggccttcacttgtctcacccaccgagacgtgcagcaggccacaacactg
ctcactaacatgggatttaacgtaaaagagcagctccgcaatatctgtgtttacacagct
gatcgggacctcagggcctttatggtagaggagttgaaaagacttaatcatctctccact
gaggacttacaaaaagtggagttcattaaagagattgaaaatttgtgctccagaccagca
acaagatgttcaaagccttttgacaagaagagggttcttcaaaaaagccagttggaagct
gagagcagaaagccgctacaggagatattgcacgaacccttgtcttgctctgtccagtct
ctggttggctcagtgcgtctggactgggtcagacactgggacaatgacacacagaaatct
gtgctgctctcccgaatcccagaccacttgttgggctcctgtgatccagctgtgctgtgg
tcctacctcacctccctacatgaccaggacagagttactgcatggctgacacacatagcc
acgcaagactgcgagagcactgctgcctccaagtggcctgcgctcactgctgctgttgtg
gatggaaacacctactgtagtgattatatgaaagaccaaattctggacatgcttgccaga
caagaagtgtttgtgcaatcagagatgtctgactttgagcagctgctgtggaggttaggt
caggccagaggtgttatgcgagacatcgatggccctcctgtcccacaattccgtgcttcc
aaaggacaggacttccacacatgctttattcagcattgtctggagaacaacctacattat
ctgctctatacctacctgcagcattacagattgactcccagtaactgccctgcagttgga
gacagagatttgtatgagagttacccctggtttgagatgatggtcaaactgcagagcatt
gcaagagatctcaaaaatccagaacgagtgtttcaggcaagcctgacaagtgcacaggtg
ctgttaccgggcagtcaggctagtgttagcagcatgctgctggaggggcacagccttctt
gctctctccactataatgtttgcacctgggggcatcgatcaggtggtgaaagggggcgat
gaaggtcaggatgtcctgtctagagtggagccacagctcctgaggatggctctgagtgca
taccccaaactcaaagctgctctttttccccagactggcccaagagtaacctcagtttgt
gatgtatcaatataccaccttatgcagtcattgcatccactggatccctacagactgttt
gggtggcagtctgctaacacactaggcactgcagaaacatcatcagagctacctcatttc
tccagctcccacctggttaataagtatgcaatcattgagaacctggactttttatactat
ctccaacacggcagaccttcctttgcatatggaattttcattattcagcatctggccggt
tccggcagtgccaagctacagatgactcgggctgcggagcaggcatactctttgggcctc
ctgaatttcagcaatccatctatagctgcagcgtgtgtgtgtttctttgagttattgggt
gtatgcagtctgaaactgagggtggaccttaaggctctcaatcttatcctcaagctctgg
agtaagaactgtgaggagaccagcatggccttacttaaacagtctctggtggacaaggta
gataagatggtggcagctgagagacagactctagaggaattactgttgcatctggagggg
gcagtgagggactgtgtggagagcagaggcatcagcaggtcttcatatgaggcaggacag
gagtgggctctccctgttcagttttgccatctacatgatctgcccctgagcacccagtac
ctacaagactgtgccaccgatggccaatggcttaacttcctgctgttcgtacagatccac
cattaccctccacaacaggtgagatatctggcagccagcttcagcccaggtctgcaggct
cacctcctcctggctttccaagaccttcagctagtgcactctcaacaagccctggaaggc
cagagagactccctctgctcgctgatgaaagaggaagactcagaatgccccaaggatctg
tttcaggtcctgttccgtagccaggagcagcctagcccctggcagtacctgttggctgaa
gctgttacactgcatagtccaccacttacagtgctggctgcttgtcaccaggatgctgag
ctactacaatgcctgtgtgtatggatcctgacctccgttgatgatgacattgcccaggaa
gttacctcccatatcaatgaaagtcctggccaccacatgtggaacctttatgacctgtca
atactatggaagatcctcctacagaagtgcaagatcagacctctgattcgtggcttccag
ctgtttcagagggaatctcccctgatccacatgttgcagatgtacgagctctgctacgac
tacaaaaactaccaaggggctaaagacaagttactggagttccagaaatgtctgcttaat
ttgaggagtagtggtagtgtcctgggtttggagtgtctcccagttcagtgggtggaagct
caggcctctgtgctgctcctcaccctgttgcagcaatgcgggacacagtatgagctgtgc
aggctgctgcagctactggctgatatggagcgtatgcttaaatctaatggtcctgacttt
aaaaagctgagccagttgagccaaatcctggctgacacaccagtgcctctgtccccatgc
cttctggagaactataccactaagagcctgcagagggagtgccagagaatgcttgaggag
ctgcaggaccttgctttgttctgtcaggccaggaaagtggctgagctggcaggactgccc
gttgaccggctgataataaatgagctgttgagggatctgaaggtgttaaaggcgacacgt
cagtgggaaagacaggagactcgactggccttctggaggaaatgtcaagagcagtttaag
gcagactgcattggagcagagtcagcctgccagtttttcctgtctcaggcagaggatcct
gtgcagagagacacagagctccttcaggtacaggagcaatgccttctgctggcttttgct
gctcattggctttgccagtgcagccctcctgcattggaacgtttagcggagctggagaag
cgccaatgggaatggcgcatccgcaggatggtcctcaccacagccctggagcagcagagc
ctgttcactccagccactggaccagatgcctttgacagtctcctcaaagaatactccttt
tccaaaatggccatcctggatgatcaagcatatttgaacattgagggtcttccaacaaca
gaggagggttgcttgctagaggaggaggagcgaaaggcactgtccactctcactggtcag
ctgttggatgaagggagtgttcacgaagcaagtcgagtatgtcgatattttgagctgctg
cacagagatgtgtggctggtgttgcagtgccggggtttggcctgtggagaaatccagcca
ggactgcaggagcttctcggctctgaccgagagtgcaggagaagcttgcccagctgctcc
agcacaggaagtctgtcctcttttgtggtggtttcctcacctgaagaccaggtactctcc
cagcttcagcttctagtagaccagtgccgtcatggtaagagctactgcaagcaggtcctc
agcctctatgagctctccaaggagctgtgttgttcctacagtgagatctcctctgaagag
ccagaggcagtgctacggaaagttctcctgtcccagcagcctgagcgctataagaaagca
caggcttttattagtgtgcagggcttgcagcctgactctgtagcacagctcatcacctcc
acagtgttggaaggactgctggcctcctcacaggacagagagacggcagagcggcatata
tacagtccttctgaaggcaaagaggccttcttgcaactggctaaactgtgcggtgacccc
aacttggtgggcatcaagttattggacatcatcactacagtctccctggcagaactggga
tgcactgtggagctgcttatcttggcacatgactgcttcagtctcacctgtaacatggag
ggcattgtcaaggtcttgcaagcagccagacacctcagccaccaacatctggcccatggg
gagagatatgggctgctggtccgattattgactggtattggaagatacaatgaaatgacg
tacgtctttgaccttctcaaccagaaccatcgttttgagatgctgctcagaaagaaagtg
gagtcgaatactagattaaagacagcacttctggactacattaagcgctgtctgccaggg
gacagtgagaaatacaacatggtggctctttgtttcagcatgcgccgagagattggagag
aatcacgaaggagctgctcgaacacagctcaaacttatcgagtcccagccatgggtggtt
accccagagctcaaaagtggcttagagaaagttctctttttgctgaaagatgctgcagaa
agttattcaaaggactcctgtatgcggcaagcattgcggtgtgtaaaaatggctaaactc
atcactctgcagcttcacttcctcaatcatggacaggaccttcgtgtagtcaatctccgg
ccatcagaactactcaatgccatgatggctctaccacggtgttatcagtcatttatagta
gctgaggcatacgattacagtcctgactgggccgagattctgtatcagaaggtgattctg
aaaggagatttctcctacctggaagagtttaagctgcacagaccacttccagcgagcctg
tttgaagaaatctctaaaaaactgatggttaacaagccgccgaacactgtgagtcagaac
ctgaagaagctgctgcagtattgtgaaaatgtctatacgcactacaaactggcgtatgaa
cataaattcgtggatgtggccaacacgctcctacaggactccaaaacaagcagttacctt
aatgaccgattaagcagctga
DBGET
integrated database retrieval system
