Pangasianodon hypophthalmus (striped catfish): 113529658
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Entry
113529658 CDS
T05759
Symbol
upf2
Name
(RefSeq) regulator of nonsense transcripts 2
KO
K14327
regulator of nonsense transcripts 2
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp03013
Nucleocytoplasmic transport
phyp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
113529658 (upf2)
03015 mRNA surveillance pathway
113529658 (upf2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phyp03019
]
113529658 (upf2)
Messenger RNA biogenesis [BR:
phyp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
113529658 (upf2)
mRNA cycle factors
P-body specific factors
113529658 (upf2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
113529658
NCBI-ProteinID:
XP_026774817
LinkDB
All DBs
Position
Unknown
AA seq
1278 aa
AA seq
DB search
MPAERKKSVNVDEKETGTFGNKEREKDRDGDRRATFSRDKGRDESKMSGKKEGGKSADEK
KRRIEEEKRRKEEKERKKREEEKQKAEEEQKRKEEEERKQQEEQEKRLLEEEAKRQKEEE
AAQLKEKEEAQQLHQEAWERHQTRKELRVKNQHAQESRPEEAFFSRLDSSLKKNTAFVKK
LRTLTEQQRSSLSHDFDSLNLSKYIGEAVSSLVEAKLKISDVGCAVHLCSLFHQRYSDFA
PQLLAAWKRHFEARKEEKAPNVSKLRTDLRFIAELTIVGLFTDKEGLSLIYEQLKNIIGA
DRESHTHVSVVISFCKHCGDDIAGLVPRRVKSAAEKFSLVFPPSEIINAEKQQPFQNLLR
EYFTSLTKHLKKDHRELQNIERQNRRILHSKGELSEDRHKQYEEFATCYQKLLANTQSLA
DLLDENMPELPQDKTVQEEHGPGIDIFTPGKPGDYELDGGIWEDEDARNFYENLVDLKAF
VPAILFKDNEKTSQNKDKEESKEAKEGREGKDVSCTEELELELEALDITDDPLELEAADE
AENEELAKKLLDEQEQEDEEASTGSHLKLIVDAFIQQLPNCVNRDLIDKAAMDFCMNMNT
KSNRRKLVRALFTVPRQRLDLLPFYSRLVATLHPCMSDVAEDLCSMLKGDFRFHVRKKDQ
INIETKNKTVRFIGELAKFKMFSKTDTLHCLKMLLSDFSHHHIEMSCTLLETCGRFLFRS
PDSHLRTSVLLEQMMRKKQAQHLDARYVTMVENAYYYCNPPPMEKTVRKKRPPLQEYIRK
LLYKDLSKVTTEKVLRQMRKLPWHDADLKSYLICCMVNIWNVKYNSIHCVANLLAGLVAY
QEDVGIHVVDGVLEDIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIFRTLFSFI
SFGVNQDGSPSPLDPPEHLFRIRLVCTLLDTCGQYFDRGSSKKKLDCFLIYFQRYIWWKK
SLEVWTKDHQFPIDIDYMISDMLDLLRPKMHLCCSLEEACHQVTELEREVLIKLGFAIEK
DGSCSSTVGEGEALDEEDEEDEDERGAETEEQSGNESEMNEPEEEEGSENEEEEHDEEEE
NTDYLTDSNKENETDEENNEVMIRGGGLKHVACAEDDDFIQALDKMMLENLQQRSGEAVK
VHQLDVAIPLQLKSQLKKGSAPACAGDADADIDTMQFVMLTRKGNKQQFKILNVPLSSHL
AANHFNQQQAEQEERMRMKKLTLDINERQEQEDYQEMMQSLAQRPAPANTNRERRPRYQH
PKGAPNADLIFKTGGRRR
NT seq
3837 nt
NT seq
+upstream
nt +downstream
nt
atgccggctgaacgcaagaaatcagtaaatgtggatgagaaagagaccggcaccttcggt
aacaaggagagggagaaagaccgagacggcgatagaagagcgacgttctcccgagacaag
ggcagagatgagagcaaaatgagcggaaagaaggagggcggcaagtctgccgacgagaag
aagcgcaggatcgaagaggagaagaggcggaaagaagagaaggagcggaaaaagagggag
gaggagaagcagaaggctgaagaggagcagaagaggaaggaagaagaagagcgaaagcag
caggaggaacaggaaaagaggctgctggaggaggaagctaaacgacagaaagaagaggag
gcagctcagctgaaggagaaggaggaagctcagcagctgcaccaggaggcgtgggagaga
caccaaaccagaaaggagctgcgtgtgaagaatcagcacgcgcaagagagccgccctgaa
gaagcctttttcagccgtctggattccagcctgaagaagaacacggcctttgttaagaag
cttcgaacgctcacggagcagcagcgcagttcgctctcgcacgacttcgactcgctcaat
ctcagcaagtacatcggcgaggcggtcagctcgctggtggaagccaagctgaagatctcg
gatgtgggctgcgccgtacacctgtgctcacttttccaccagcgctactccgactttgct
ccacagctcctagccgcctggaagaggcacttcgaggcgcgtaaggaggagaaagctccg
aacgtgagcaagctgcgcacagacctgcgcttcatagccgagctcactatcgtgggcctg
ttcaccgataaggaagggctctctctgatctacgagcagctgaagaacatcatcggggcg
gaccgtgaaagccacacccacgtctccgtggtgatcagcttctgcaagcactgcggagac
gacatcgccgggttggtgcctcgccgcgtgaagagcgcggcggagaagttcagcctggtc
tttcctcccagcgagatcatcaacgccgagaagcagcagcccttccagaacttgctcaga
gagtatttcacgtctctcaccaagcacctgaagaaagatcacagagagctgcagaacatc
gaaagacaaaacaggcgtatccttcactcgaaaggagagctgagcgaggatagacataag
cagtatgaggagtttgcaacgtgctaccagaagctgctggctaacactcagtctctggct
gatctactggatgagaacatgcctgagctgcctcaggataaaactgtccaagaagaacac
ggtccaggtatcgacatcttcactccagggaaacctggagactacgagctggacggtggg
atctgggaggacgaggatgcgaggaacttttacgaaaacctggtggacctgaaggctttc
gtacctgccattctgttcaaggacaacgaaaagacgagccagaacaaagacaaggaggag
agcaaagaagctaaagaaggacgtgaggggaaagacgtgagctgcacagaggagctagaa
ctggagctcgaggctctggatatcacagacgaccctctagagctagaagctgctgatgag
gctgagaatgaagaactggccaagaaactcctcgatgagcaagaacaagaggacgaagaa
gccagcactggatctcatctcaaactcatcgtcgacgctttcatccagcagcttcccaac
tgtgtcaacagagacctgatcgacaaggctgcgatggacttctgtatgaatatgaacacg
aagtccaaccgcaggaagctggtccgtgcgctcttcaccgttcccaggcagagactggat
ctgttgcctttctattcacggttggtggccactctgcacccgtgcatgtctgatgttgcg
gaggatctctgctccatgctcaaaggagacttccgattccatgtaagaaagaaggaccaa
attaacattgagaccaagaataagacggtgaggtttattggcgagttggccaagttcaaa
atgttttccaaaacggacacgctgcattgcctgaagatgctgctgtctgatttctctcat
caccatatcgaaatgtcctgcactttactggagacgtgcggacgcttcctctttaggtca
cctgactcgcacttgcgtactagcgtcctactggagcaaatgatgcggaaaaagcaggca
cagcacctggacgctcgctacgtgacgatggttgagaacgcctactactactgcaaccct
ccacccatggagaaaaccgtgcgcaagaagaggcctcctctgcaggagtatatccgcaaa
ctgctctacaaagacctgtcgaaggttaccactgagaaggttttaagacagatgcgcaaa
ttgccctggcacgacgcagatttgaagagctacctgatctgctgcatggtgaacatctgg
aacgtgaagtacaacagtatccactgtgtggctaacttgctggccgggctagtcgcatat
caggaggacgtcggtatacacgtcgtggatggagtactggaggatatacgccttggcatg
gaggtgaaccagccgaagtttaaccagcggcgcatcagcagtgcgaagttcctgggcgag
ctgtacaactaccgcatggtggagtcggccgtgatcttccgcacgcttttctctttcatc
tcattcggtgtgaatcaggacggctcacccagtcctctggatcctcctgaacacctgttt
cgcatccgcttggtgtgcacgctgctcgacacctgcggccagtacttcgatcgtggctcc
agcaagaagaagctggactgcttcctcatctacttccagagatatatctggtggaaaaag
agtttggaggtgtggactaaagatcaccagtttcccatcgatatcgactacatgatcagt
gacatgttggatttactgagacccaaaatgcacctgtgctgctctctggaggaagcctgc
catcaggtcactgaactcgagagagaagtcctcatcaaactgggctttgctatagagaag
gatggaagctgttccagcaccgtgggagaaggagaggctctcgatgaggaggacgaggaa
gacgaagacgaacgtggagcagagacagaagagcagtccggaaacgagagcgaaatgaac
gaacctgaggaggaggaaggctctgagaacgaggaagaagagcacgacgaggaggaagaa
aacacagactacctgacagactccaataaagagaacgagacagacgaggaaaataacgag
gtgatgattcgtggcggaggtctgaagcacgtggcctgcgctgaggacgacgactttatt
caggctctggataagatgatgctggaaaacctgcagcagcgcagtggcgaggcagtgaaa
gtgcatcagctcgacgttgctatcccgctgcagctgaagagtcagctgaagaaaggctcc
gcccccgcgtgcgcaggagacgcagacgctgacatcgacaccatgcagttcgtcatgctg
accaggaaaggcaacaaacagcagtttaagatcctgaacgtgccgctgtcgtcacatctg
gccgccaatcacttcaaccagcagcaggcagagcaggaggagcgcatgcgtatgaagaaa
ctcactctagacatcaacgaacgacaggaacaggaagactaccaggagatgatgcagtcg
ctggctcagagacctgcccctgctaacacaaaccgagagcgcagaccgcgctaccagcac
cctaaaggagcaccaaacgcagacctgatattcaagactgggggaaggagacgctga
DBGET
integrated database retrieval system
