Pangasianodon hypophthalmus (striped catfish): 113529843
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Entry
113529843 CDS
T05759
Symbol
lsm4
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm4
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp03018
RNA degradation
phyp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113529843 (lsm4)
09123 Folding, sorting and degradation
03018 RNA degradation
113529843 (lsm4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phyp03019
]
113529843 (lsm4)
03041 Spliceosome [BR:
phyp03041
]
113529843 (lsm4)
Messenger RNA biogenesis [BR:
phyp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
113529843 (lsm4)
mRNA degradation factors
5'-3' decay
Lsm complex
113529843 (lsm4)
Spliceosome [BR:
phyp03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
113529843 (lsm4)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
113529843
NCBI-ProteinID:
XP_026775168
UniProt:
A0A5N5MVW4
LinkDB
All DBs
Position
Unknown
AA seq
142 aa
AA seq
DB search
MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY
IRGSTIKYLRIPDEIIDMVKEEVVSKGRGRGGMQQNKQQGKGRGGGAGRGVFGGRGRGMQ
GAGRGQPQDKKPGKPQGVKNQH
NT seq
429 nt
NT seq
+upstream
nt +downstream
nt
atgcttccactatctttactgaaaacagcgcagaaccacccaatgctggtggagctgaag
aatggagagacatacaacggtcatctggtcagctgtgacaactggatgaacatcaattta
agagaagtcatctgtacctcccgggatggagataagttctggaggatgcccgaatgctac
atccgaggaagcacgatcaaatacctgcggatccctgatgaaatcatcgacatggtgaaa
gaggaagtcgtgtccaagggccgtggccggggtggcatgcagcagaataaacagcaggga
aagggcagaggaggcggagccggccgaggtgtgtttggtggccggggaagaggcatgcaa
ggtgctggccgtggacagccacaagacaaaaagcctggaaaaccacagggcgtcaaaaac
cagcactga
DBGET
integrated database retrieval system
