Pangasianodon hypophthalmus (striped catfish): 113530168
Help
Entry
113530168 CDS
T05759
Name
(RefSeq) ATP-binding cassette sub-family A member 1-like isoform X1
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp02010
ABC transporters
phyp04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
113530168
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
113530168
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
phyp02000
]
113530168
Transporters [BR:
phyp02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
113530168
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
SRP54
AAA_23
Motif
Other DBs
NCBI-GeneID:
113530168
NCBI-ProteinID:
XP_026775778
LinkDB
All DBs
Position
Unknown
AA seq
2282 aa
AA seq
DB search
MSVSTQLGLLLWKNFTYRRRQTFQLLIEIVWPLFIFFILIAVRLSYPPYEQHECHFPNKA
MPSAGTLPWIQGIVCNANNPCFRHPTPGESPGVVGNFNDSIISRLFSDAKKILLYSQNDK
SLDGFKELINAVKAMQNSSGFKLKEFLNDNETLSAFLMQNASLSDNVVQDILMAEVNLEK
VLTRGYGVHLRTMCNTSTLEQFVRFPNSEVANLTHNFICSSSPHWLNQAEKHFLANLDFF
RPLRSDVRSERNDTRHVAKATDNLLESLSSVAVELASMRSWSDLRNEILFLTQNATGSPS
QMYQAVSRIVCGHPEGGGLKIKSLNWYEDSNFKAMFGNYNSSDEEPVSVYDNTTTPYCNN
LMKNIETSPISRMIWRALKPLLMGKILYTPHTLATQKIIQEVNRTFQELGILRDLGGMWE
ETRPKVWNFMENSEEVDLVRMLLQNNITAYFFSAQLSGTQWSVQDLSSFLTKHSEDTRPP
GTAFTWRNVFNETDQAIMSISRFMECVNLDKLEPVSTEEKLVNESLGLLDNRKFWAGIVF
PDIDLNSSELPPHVNYKIRMDIDNVERTNKIKDAYWDPGPRADPFEDLRYVWGGFSYLQD
VIEQSIIRVVTGTKEKTGVYIQQMPYPCYVDDIFLRVMSRSMPLFMTLAWMYSVAIIIKS
VVYEKEARLKETMRIMGLDNGILWFSWFISSLIPLLMSAGLLVFALKMGNLLPYSDPGVV
FLFLGSFAVVTIMQCFLISTAFARANLAAACGGIIYFTLYLPYVLCVAWEDYVGLPAKVI
ASILSPVAFGYGCEYFALFEEQGVGIQWSNLISSPMEGDDYSLTTAIILMYFDAFLYGVM
TWYIEAVFPGQYGIPRPWYFPFTKSYWFGEGEQNQAPTILGKKANAGAVCIEEEPTHLEL
GVYIKNLVKVYRHGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTA
YIMGKDIRSELSAIRQSLGVCPQHNVLFSMLTVEEHIWFYARLKGLSEKKVKDEMDQILY
DTGLPHKRKSKTSELSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYARRGIWDLLLKY
RAGRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLFLKTHLGTGYYLTLVKKEPEAS
LSSSRNSTTTVSYIKKDEEDSESSSDAGLGSDHESDAATAIGTSWTDSPVVPADISLISG
LILKHVPNSRMVEDLGHEITYILPYESAKDGAFVDLFHDLDDHLADLGISSYGVSDTTLE
EIFLKVAEDSGVDTEMLSDGTLPIRRRRRHAFGADHQSCLKPLTEDDNFDCNESEVDPDS
RETDHLSSTDGKGSYQVQGWSLKRQQFVALLWKRFLYARRSRKGFFAQIVLPAVFVCIAL
VFSLIVPPFGKYPSLALQPWMYEDQVTFISNDAPEDASTQNLLSALTEGPGFGTRCMDGE
PIPDVPCTMGDEDWSIPEITENVLEVFRSENWTMENPSPDCECSCDGNKKMLPECPAGAG
GLPPPQIKISERDTLQNLTGRNISDYLVKTYAQIIGKSLKNKVWVNEFRYGGFSLGARST
QVLPPAQEIDDAISRVREIFHLPKNSGTAADRFLNSLSAFINGLDTKNNVKVWFNNKGWH
SIGSFLSVMNNGILRANLPPGKDPSKYGITAYNHPLNLTKEQISQVALVTTSVDVLVSIC
VIFAMSFVPASFVVFLIQERVSKAKHMQFISGVQPYLYWLANFIWDMCNYIVPATLVIII
FVCFQQKAYVSSNNLPVLALLLLLYGWSITPLMYPASFLFKIPSTAYVVLTSVNILIGIN
GSVSTFVLELFGGDKIGGINDILKNVLLIFPHFCLGRGLIDMVKNQAMADALERFGENHF
RSPLEWDMVGKNLFAMAVEGVVFFIITVLIQYRFFIKPRALRPKLSPIGEEDEDVARERQ
RIISGAGQGDILELRELTKVYERKKKPAVDRLCVGIPPGECFGLLGVNGAGKTSTFKMLT
GDSAVTSGEAFLARKSILREIDEVHQNMGYCPQFDAINDLLTGREHLEFYAILRGVPEGE
VCEVAEWGIRKLGLIKYGDKAAGSYSGGNMRKLSTAMALIGGPPVVFLDEPTTGMDPKAR
RALWNCIHSIIKAGRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQHLKNRFGDGYT
IILRVAGPEPDLQPVMKFIEIELPGSILKEKHRNMLQYQLPSSLSSLAHIFSILAKHKDF
LQIEDYSVSQTTLDQVFVNFAKDQSDDHCDHSIRRKEAIVNIPLLSLPATLKDEENHKES
FV
NT seq
6849 nt
NT seq
+upstream
nt +downstream
nt
atgtctgtctccactcagctgggcctgctgctgtggaagaacttcacttataggagacga
caaacgttccagctgctaattgagatcgtgtggcccctctttatcttcttcatcctgatt
gctgtgagattgagctaccccccatatgaacaacatgagtgtcactttcccaacaaagcc
atgccctcagcaggcactctgccatggatccagggcattgtgtgtaacgccaataaccca
tgtttccgtcaccctaccccaggagaatcccctggagtagtcggcaacttcaatgattcc
ataatatcacgacttttttcggatgccaagaaaatcctcctgtacagtcaaaatgacaag
agtctggatgggttcaaagagttaatcaatgcagtgaaagccatgcagaacagttcaggt
ttcaagcttaaagagttcctaaatgacaacgaaaccctgtctgcattcctcatgcaaaat
gcttccctctcagataatgttgtacaggatattctgatggcagaagtgaacctggaaaag
gtgctaacacgaggctatggggtacatctgaggaccatgtgcaacacttccaccttggag
caatttgtgagattcccaaacagtgaagtagcaaacctcacccacaacttcatctgcagt
tcatctccacactggctgaaccaagctgagaaacacttcctggccaacctggacttcttc
agacctctaagatcagacgtaagatctgagagaaacgacacccggcatgtcgccaaagcc
acagacaacctcttggaaagcctgagttctgtagctgtggagttggccagcatgcggagc
tggagtgatctccgcaatgagatcctcttcctgacccagaatgccactggttcacccagt
cagatgtaccaggctgtgtcaagaatagtgtgtggacatcctgaaggtggtggcctcaaa
atcaagtctcttaactggtatgaggacagcaacttcaaagcaatgtttggcaactacaac
agcagtgatgaggaacctgtttcagtctacgacaacacaaccactccctactgtaacaat
ctaatgaagaacattgagactagccccatctcacggatgatctggagagcactgaagcct
ctgctcatggggaagatcctgtacacacctcacacccttgccacacaaaagatcatccaa
gaggtcaacaggacatttcaggagctgggaattctcagagatctgggcgggatgtgggaa
gagaccaggcccaaggtgtggaacttcatggagaacagtgaagaggtggacctagtgcgg
atgttactacagaacaacatcacagcctatttcttcagtgcccagctgagtggtactcag
tggagtgtgcaggatcttagcagtttcctgaccaagcattctgaggacactcgtccacct
gggacagctttcacatggagaaatgtcttcaatgaaaccgatcaagctattatgagcata
tcccgcttcatggagtgtgtgaatctggataaattagagcctgtgagcactgaagagaag
ttagtgaatgagtctctcggtctgctggacaacaggaagttctgggctggaattgtgttc
cccgatattgacctaaacagctctgagcttcctccccatgtcaactacaaaatccgcatg
gacattgacaacgtggagcgcaccaacaagatcaaggatgcgtactgggaccctggcccc
agagctgacccatttgaggacttgcggtacgtttggggcggtttctcttacctccaggat
gttatagagcagagcatcatcagagtagtaacaggaaccaaagagaagactggagtctac
atccagcagatgccttacccatgctatgtcgacgacattttcttgcgtgtgatgagtcgt
tccatgcccctcttcatgaccctagcctggatgtactctgtggctattataataaagagt
gttgtctacgagaaggaggcccgcctcaaggagacgatgaggattatgggtttggacaac
ggtatcttgtggttcagctggttcatcagcagtcttatcccacttctcatgagtgctgga
ctcctagtatttgcactcaagatggggaacctgcttccttacagtgaccctggtgtggtc
ttcctctttttgggctccttcgctgtggtcaccatcatgcagtgtttcctcatcagcaca
gcatttgctagggcaaacctggctgcagcatgcggaggaatcatctacttcacactctat
ctgccctatgtgctgtgtgtggcctgggaggattacgtgggtcttcctgcgaaagttatc
gctagtatactctctccagtggcctttgggtatggctgtgagtactttgccctgtttgaa
gagcagggagtggggatccagtggagcaacctcatctctagcccaatggaaggggatgac
tacagtctcactactgccattatcctgatgtactttgacgccttcctctatggtgtcatg
acctggtacattgaggctgtgtttcctggtcagtatggcattcccagaccatggtacttc
ccattcaccaagtcttactggtttggagaaggagagcaaaatcaggcacccacaatactg
ggaaagaaggcaaatgcaggagctgtgtgcattgaggaagagcccactcatcttgaactg
ggggtgtatattaagaacttggtgaaggtctataggcatggcaaaaagcttgctgtagac
ggcctgacactgggattctatgagggtcagattacatcctttctggggcacaatggagca
ggaaaaaccaccaccatgtccatcctgactggtttgtttccaccaacatctggcacagca
tacatcatgggcaaagatatccgttcagagctcagtgctatccggcagagccttggcgtt
tgccctcagcacaacgtcctcttcagcatgctgacagtggaggagcacatctggttctat
gcacgactcaaaggcctctctgaaaagaaagtgaaggatgagatggatcagatcttgtat
gacacaggtctgccacacaaacgcaagtccaagaccagtgagctctctggtggcatgcag
aggaagctttcagtggcccttgcatttgttggagggtcaaaggtggtcattctggatgag
ccaactgctggggtggacccttacgctcgcaggggcatctgggacctcctgctgaaatat
cgtgcaggccgaaccatcatcctttccactcatcacatggacgaagcagacatcttgggt
gatcgtattgccatcatctctcatgggaagctatgctgcgtaggctcttctctcttcctg
aaaactcatctgggaactggatactacttgacactggttaagaaggaaccagaagcttct
ctgagctccagcagaaactccaccactactgtgtcttatatcaagaaggatgaagaagac
tcagagagcagttcagatgctggtttgggcagcgaccatgaaagcgatgctgccacagct
attggcacctcgtggactgattcacctgttgttcctgcagacatctctctaatctcaggt
ctgatcctcaagcatgtccctaactcacgcatggtggaggatctgggacatgagatcacc
tacatcctgccttatgaatcggctaaagatggtgcctttgttgatctcttccatgatttg
gatgaccaccttgctgatttgggcatctcaagttatggtgtttcagacaccacacttgaa
gagattttcctgaaagtggcagaggacagtggagttgatactgaaatgctgtcagacggc
acgctgcctatacgcagacgtagacgacatgcttttggagccgatcaccagagctgcctt
aaacccttgactgaggatgacaactttgactgcaatgagtctgaagttgacccagattcc
agagagactgatcacttaagtagcactgatggtaaaggttcataccaagtccagggctgg
agcctgaagagacagcagtttgttgccttgctatggaaaaggttcctgtacgctcggcgt
tccaggaaaggattctttgcccagattgttctgcctgctgtatttgtgtgcatcgccctg
gtattcagtctcattgtccccccctttggaaaataccctagtcttgccctgcagccatgg
atgtatgaggatcaagttacctttatcagcaacgatgcacctgaagatgccagcactcaa
aacttactctccgcactaacagaaggccctggctttggaacacgctgtatggacggagaa
ccaataccagatgttccctgtactatgggtgatgaggattggtccataccagagatcaca
gaaaatgtgttggaggtgttcaggagtgaaaactggaccatggaaaacccgtcaccagat
tgtgagtgcagctgtgatggcaacaagaagatgctcccagaatgccctgctggtgctgga
ggccttccacctccgcagataaagatcagtgagagggacacacttcaaaacctgactgga
agaaacatctcagactacttggtgaagacttatgcgcaaatcattggcaaaagtttgaag
aacaaggtctgggtgaatgagttcagatatggaggtttctcactgggtgccagaagcact
caggttctcccacctgctcaggagattgatgatgccatttctcgagtgagggaaatattc
cacctaccgaagaactcagggacagcagctgatcgctttctaaacagtctctctgcattc
atcaatggattagacaccaaaaataatgtgaaggtctggttcaataacaagggctggcac
agcatcggatccttcctcagtgtgatgaacaatggtattctgagggccaatttgcctcca
gggaaggacccaagcaaatatggaattacagcctacaatcaccctctaaaccttaccaaa
gagcagatctcacaggtggcactggtgacaacctcagtggacgtcctggtgtctatctgc
gttatctttgctatgtcattcgtccctgctagctttgttgtctttctcatccaagaacgt
gtgagcaaggccaagcatatgcagttcatcagcggagtacagccgtacctctactggctg
gccaattttatctgggatatgtgcaattacatcgtcccagcaaccctggtcataatcatc
tttgtgtgcttccaacaaaaagcctatgtgtcttccaacaatctgccagtactcgccctg
ttgctgcttctgtatggatggtccatcacacctctgatgtacccagcttccttcctgttc
aagatccccagcactgcatacgttgttctgaccagcgtcaacatactgattgggatcaat
ggcagtgtgtccacttttgttctggagttgtttggtggcgataaaattggtggcatcaat
gacatactgaagaacgtgctcttgatcttccctcacttctgtctgggacgaggcctgatt
gacatggtgaagaatcaggccatggctgatgctctggagagatttggagagaaccatttc
cgctcccctttggaatgggacatggtgggtaagaacctgtttgccatggcagtggaagga
gtggtcttcttcattatcactgttctcatccagtaccgcttctttatcaaacccagagct
cttcgccctaagttgagtccgattggagaggaagatgaggatgtggccagggaacggcag
aggattatcagtggagcaggacaaggagacatccttgagctccgagagctcacaaaggtg
tatgagaggaaaaagaagcctgctgtggataggctttgtgtgggaattcctccaggagag
tgctttggtctgcttggagtgaatggagctgggaagacaagtacctttaaaatgctgaca
ggagattctgcagtcaccagcggagaggcattcctagctaggaagagtatactcagggaa
atagatgaggtacatcagaacatgggctattgccctcagtttgatgccatcaacgacctg
ctgacaggcagagagcacctggagttctatgccatcctgcgtggtgttcctgaaggggaa
gtgtgtgaggtggctgagtggggcatccgcaagctgggcctcataaaatatggcgacaaa
gcagctggaagctacagcgggggcaacatgcgcaagctctctacagccatggccctcatc
ggaggcccaccagtggtctttctggacgaacccaccactgggatggaccccaaggcccgc
agagctctgtggaactgcatccacagcatcatcaaggcggggcgctccgtcgtgctgact
tcacacagcatggaagagtgtgaggccctgtgcaccaggatggccatcatggtaaacggc
agattccgatgtctaggaagtgtccagcatctgaaaaacaggtttggtgatggatacacc
attatcctgagggtggcaggacccgaaccagacctgcagcccgtgatgaagtttattgag
atcgagctgcctggcagtatactgaaggagaaacacagaaacatgctgcagtaccagctg
ccctcatccctgtcctccctcgctcacatcttcagcattcttgccaaacacaaagatttc
ctccagatagaggattactccgtttcccagaccacactggaccaggtgtttgttaacttt
gccaaggaccaaagtgacgatcactgtgaccactccatacgacgtaaagaggcaattgta
aacattcctctgctcagcctgccagcaactttaaaggatgaggagaaccacaaggagagc
ttcgtatga
DBGET
integrated database retrieval system
