Pangasianodon hypophthalmus (striped catfish): 113530449
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Entry
113530449 CDS
T05759
Name
(RefSeq) tripartite motif-containing protein 54-like isoform X1
KO
K10654
tripartite motif-containing protein 55
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
113530449
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
phyp04121
]
113530449
Ubiquitin system [BR:
phyp04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
113530449
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-RING_UBOX
zf-C3HC4
zf-B_box
zf-RING_5
zf-RING_2
zf-C3HC4_3
RING_XB3-XBAT31
zf-C3HC4_4
zf-C3HC4_2
zf-RING_6
COS
Sina_RING
Trypan_PARP
ARA70
DUF6270
Exonuc_VII_L
Zn_ribbon_FGT1_2
Motif
Other DBs
NCBI-GeneID:
113530449
NCBI-ProteinID:
XP_026776239
LinkDB
All DBs
Position
Unknown
AA seq
590 aa
AA seq
DB search
MSLPLDLSSFHRDASLGTLEKQLICPICLEVFTKPVVILPCQHNLCRKCANELYQPSLFQ
VGIGGRFRCPSCRHEVVLDRHGVYGLQRNLLVENIIDVYKQASASCRPPPKPLAQINCEE
HEGEKLNIYCITCQIPTCSLCKVFGAHKSCQVAPVSDVYQQQKTELSDGIGSLVATNECI
QACINDLEEICRSVEENSRNQKQILCEKFDRMCGILEERRKIMLQRITYEQDEKTSWAQS
LVHTYSEHVDTNSKLVQTALNAMEEPEMAAFLQTSKNLIEQVSEATKSAPLQTLQPGYEN
MDHYKVDFNAEERALYQLDFIKPEEEVEEPPEEPAPEPEPEVLPEPEPEPEYEPVHSLVE
SSEPDNELKLENYEIKNVLSETKEENQLQVEGCSARPKDVICEKSGLNTQQDQTELGCEG
HDSGIHCLTSEAGEETKLYPTWYRPNNRPMLSQSQATPTDALGVPGHIPKLMSEPSCQFH
QTDTPLSMWISGSLMPLSNENQAQLGRGSLESTQPYMSEVEKNICSELVSGPANKDSMTS
ISPQVSPFSTDYGHNISPSLLHHYFTCDLVGLFPQVIPASWPSVIVSFFI
NT seq
1773 nt
NT seq
+upstream
nt +downstream
nt
atgtcccttccactggacctgagctccttccacagggatgcttcactgggcacgctggag
aagcagctcatctgccccatctgcctggaggtctttaccaaacctgtggtcatactgcca
tgccagcacaacctctgccgcaaatgtgctaacgaactttaccagccttctctgttccag
gttgggattggaggtcgttttcggtgtccatcctgtcggcacgaagtcgttttggaccgt
catggtgtttatgggctccagaggaaccttctagtggaaaatatcattgatgtctacaag
caagcatctgcaagttgtaggcctccaccgaaaccactggcacaaataaactgtgaagaa
cacgaaggggagaagctgaacatttactgcatcacctgtcagatccccacgtgttcactc
tgtaaagtgtttggagcacataagtcctgtcaggtggctcccgtctctgatgtatatcaa
cagcaaaagaccgaactcagtgatgggattggatccctggttgccactaatgagtgcatc
caagcttgcataaatgatctggaggagatctgtaggagtgttgaggaaaatagcagaaac
caaaagcagatactgtgtgagaagttcgaccgtatgtgtggtatcctggaagaaagacgt
aagattatgttacagcgaatcacatatgagcaggatgaaaagacaagctgggcccaaagc
ttggtacatacctacagtgagcatgttgacacaaactcaaagttggtgcagactgccttg
aacgccatggaagagccagagatggctgcatttcttcagacctcaaaaaacctcattgaa
caggtcagcgaggcaactaaatctgctccattgcagaccttacagcctggatatgaaaac
atggatcactataaggttgattttaatgctgaggagagggctctctaccagctagatttc
atcaaacctgaagaggaggttgaagagcctccagaagaaccagcaccagaacctgagcca
gaagtgttaccagaacctgaacctgagcctgaatatgaaccagtgcacagtctggtagag
agctctgagccagacaatgaactgaagttggaaaactatgagataaagaatgttttatct
gagacgaaggaggaaaaccagttacaagtagagggatgttcagcgagaccaaaagatgtc
atatgtgagaaaagtggactgaacacccaacaggaccagacagagttagggtgtgagggg
catgattcaggaatccactgcttaacttcagaagcaggtgaagagactaagctctacccc
acttggtatagacccaacaacaggccaatgcttagccaaagccaagcaacacctactgat
gccttgggggttcctggccatatacccaaactcatgagtgaaccctcatgtcagttccac
cagacagacacacctctgtccatgtggataagtggcagccttatgcctctgtctaatgag
aaccaggcccaactcggaagaggctcactagagagcacccaaccatatatgtcagaggtt
gagaagaatatttgttctgagttggtcagtgggcctgccaacaaggatagcatgacttct
atatctccacaggttagtccattttcaacagattatgggcacaatatatcaccatcacta
ctccatcattacttcacttgtgatcttgttggtctatttcctcaagtgattcctgcatca
tggccatcagtcattgtctctttttttatatga
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