Pangasianodon hypophthalmus (striped catfish): 113530465
Help
Entry
113530465 CDS
T05759
Symbol
soga1
Name
(RefSeq) protein SOGA1 isoform X1
KO
K27704
microtubule cross-linking factor
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
phyp03036
]
113530465 (soga1)
Chromosome and associated proteins [BR:
phyp03036
]
Eukaryotic type
Centrosome formation proteins
Microtubules and associated factors
Microtubule-associated proteins
113530465 (soga1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SOGA
SOGA1-2-like_CC
Striatin
TSC22
Motif
Other DBs
NCBI-GeneID:
113530465
NCBI-ProteinID:
XP_026776285
LinkDB
All DBs
Position
Unknown
AA seq
1770 aa
AA seq
DB search
MTKTKVDAASPTHFVSVKEKRLRSKMETESGREAGDGVQAQAISHEKKKPHRAPSPARPR
DVPGWSITKIRGGIGAPTLSVKPGAIHLGSRLSRRSPVSGKETKGEKMGKSAGKSALSAL
GATKSSVKPNKAARRKVSDASIASDDLSKDSGKESGKLSPTDSSSELSDCASEEHKLSTD
ALSSDTESSSRGAGAESESARGETERQRLALGADAAQESASPGDERSLTSLDSRMPASTS
LAFSDLNEDLTDGMHEEYLREIEELRSENDYLKDEVEELRSEMLEMRDMYMEEDVYQLQE
LRQQLEQANKTCRILQYRLRKAERRSLRVAQTGQVDGELIRTLEQDVKVAKDVSIRLHNE
LDAVEKKRSRLEKENEELQVKLQDLEVAKQVLQAELEKSRENSLKKRGARPNNKSDKKTS
PQPPEDSSDLKCQLHFAKEESALMCKKLTKMVKDNEVMKEELTKYRSLYGDMDTSLTVEE
VADSPHTREAEVRIHLKLVEEEANLLSRRIVELEVENRGLRAEMDDMKIQETPGGLAVAT
GVGQLLISPSAENVMELQRHLQFVEEEADLLRRSLIEMEEQNKLLMNELNRYKSELPPDS
DIESLSPSTILPPSITPGVAASEEGALNEASQEELLAARLQISDLSSKVKKLQYENRILL
SNLQRCDLASRHVDIRPALETDAEAGDSAECVPSPECNDDPMDGEENQPLEDKGEKVTGN
NHSLSDQCLSIKELLAIRDQAQLITSAIQLLVAADSNCLLAVSSDTILQKITARDPEDAG
FLEKNQVQTSNLSLVEALHSRLQSLQAQLQSLSQRIEVLGESPENKYVKGLSSVALVSQS
AEPYPLDTQVNQITVQQKPNIRDQADVKGQDAHLCKADESNSNTDSNKDRVTELTETNCA
LLLEQVRELQAQLCEAKEKAEKTQEELALENQVHRDYTQSCSQKLSQLQEEHKKVLVQRD
FQLQSMSLQTRLQQKFWSQERNVLVQESQQLKQILLLVSLKLRWLLKQWRLGKKFDAEGK
DILQINSIKELHLPLEDDGLAPHHGDNKMSASKEQPSSPTNKDRSLPENNLQQASGLNAT
LSDLKVALQDLSTELREERQSSQELTQQFARAKASWEVERTELKSLITQLEGKAGKMSAA
GTDMDPPHLKGALKREREEHQHLLADSYAAVMDLTKQLQISERNWSREKLELLEHFNQER
NQWEQRLHDAQSKGTQSLNDKGISIDATTNETNLQRTQPISSLSDFESLLDAASFLPDHE
VNGIAEVKAGKHQFNDLVIRTDLSDLSQKNWKYLSSESASLEKAEPFKTWDCPSTSFPEL
ELSVQHVQRSYTAPDKTGIRIYYSPPAVRRMERKVKDLSLNDTQLGLKFIGATNSDQAVL
PPVTQASSSHLSSSYEQWLSSLSLQHRDLLEGRAGSSEALHTLEISANLSDDMKEMTNCV
RQAIRSSSLERKCSKDAGSQTVGFTNTGTQTTKFVSVGLQTESPASSTSRGAGFHGKVWS
PRPSTSLTSARSRQISTSLEKVHGRIDRPCCSPKYGSPKLTRRVSASSSSSKLETSSTSS
RDRSMWNLPNRSIAQSGSAWARSTTTRDSPVLSGLNDGLSSLFSVVEHPSSMESLWRGDT
CPGRQAAGKPSCPSVGISLGDPGTQKYGIVQEFFQNMCGRTLPGEKTGAIDEPKPECLSG
ALMSTDSVTKIVNKRFMRQTLRDDAVVSGKESNTSASSPEDSSCDCKSQSPTSCFARSSR
STVRHIHSQCKHRLQETALGNDERLDVSNE
NT seq
5313 nt
NT seq
+upstream
nt +downstream
nt
atgaccaagacaaaggttgacgccgcgtccccgactcacttcgtctcggttaaggaaaag
agactcaggagcaaaatggagacggaaagcgggcgtgaagcaggagacggcgtgcaagcg
caggcgataagccacgagaagaagaagccgcaccgcgcgccgtcgcccgcgagacccaga
gacgtgccgggatggtccatcaccaagatccggggggggatcggggcgccgaccctcagt
gtgaagccgggggccatccatttagggagccgtctgtccagacgcagccccgttagcggg
aaggaaacaaagggtgagaagatggggaagtcagcggggaaatcggcgctgtctgcactc
ggggctacgaagagtagcgtgaagccgaacaaggccgctcggaggaaagtatcagacgcc
agtatcgcgtctgacgacctgagcaaagactcaggcaaggagtcgggcaaactgtcgccc
actgacagcagctccgagctctccgactgcgcctcagaggagcacaagctctccacggac
gcgctgagcagcgacacggagagcagcagccgcggcgctggagccgagagtgaaagcgcg
cgcggggagacggagagacagcggctcgcgctcggagcagacgcggcgcaggaaagcgcg
tctccgggggatgagcgctccctcacctcgctcgacagccggatgcccgcgagcacatct
ctggccttctccgatctcaacgaggacctaaccgatggcatgcacgaggaatatctccga
gaaatcgaggaactgaggtcggaaaacgactatttaaaggatgaggttgaggagctgcgc
tcagagatgctggagatgagggacatgtacatggaggaggatgtgtaccagctccaggaa
cttaggcagcaactggagcaggccaacaagacatgtcgcatcctgcagtaccgactacgc
aaggccgagagacgcagcctgcgcgtggctcaaaccggccaggtggatggcgagctcatc
cgtaccctggagcaagacgttaaggtggccaaggacgtgtccatccgcttgcacaatgag
ctggatgcagtggagaagaagaggagtcgtctagagaaggagaacgaggagctgcaagtg
aagctccaggacctggaggtggccaagcaggttctgcaggccgagctggagaagagccga
gagaattctctaaaaaagcgaggtgcaaggccaaacaacaaatccgataagaagacgtca
ccacagcctccagaggatagttctgacctgaagtgccagctccattttgccaaggaggag
tcggcacttatgtgcaagaaactcaccaagatggtgaaagacaatgaggtgatgaaggag
gagctgaccaaataccgttcactctatggtgacatggacacttcactgaccgtggaagag
gtggccgactcgccccacacgcgtgaagctgaggtccgaattcacctgaagctggtcgag
gaggaagctaacttactgagtcgaaggatagtggagctggaggtggagaatcgtggtctc
cgggctgaaatggatgacatgaagattcaggagacccccggaggtcttgcagttgcgaca
ggagttgggcagctgctaatttcaccttcagctgagaatgttatggagctgcagcggcac
ctgcagtttgtagaagaagaagcggatctgctgagaaggtcactgattgagatggaggag
cagaacaagctcctgatgaatgaacttaatcggtacaagtcggagcttcctcctgattct
gatattgagtccttgtcgccctccaccatacttcctccatccatcactcctggagtggca
gcttctgaagaaggggctctgaatgaggcatcccaagaagagctcctagcagccaggctt
caaatcagtgacctgagcagtaaggtgaagaagctccagtatgagaaccgcattttgctg
tccaacctccagcgctgcgacctggcttccagacatgtggacattcggcctgccctggag
actgatgcagaggcaggggactcagccgaatgcgtgcccagcccagaatgtaatgatgac
ccaatggatggtgaagagaaccagcctctggaggacaagggcgagaaggtgacaggaaac
aaccattccctttctgatcagtgcctcagcatcaaagagctcttggccatccgtgaccag
gcccaactaattacctcagcaatccagctcctcgtggctgccgattccaactgtcttcta
gccgtctcatcagacacaatcttacaaaaaatcacagctagggaccctgaagatgctggg
ttcctggagaagaaccaagtgcagacctctaatctgtctctagttgaggcccttcacagt
aggcttcagtctttgcaggcccagctgcagtctctcagtcagaggatagaggtcctggga
gagtcccctgagaataagtatgtgaaggggctgtcgtctgtggccctagtctctcagtca
gcagagccctacccactagatactcaggtcaatcagatcacagttcagcagaagcccaac
attagggaccaagcagacgtcaaaggtcaagatgcgcacctgtgcaaagctgacgagagc
aacagcaatacagacagcaacaaagaccgtgtgacagagttgacagagaccaactgtgca
ctgcttctggagcaggttcgtgagcttcaggctcagctgtgtgaggcaaaggagaaggct
gagaaaactcaggaggagttggcactggagaatcaagtacaccgtgattacacacaatcc
tgctcccagaaactctctcagctgcaggaggagcacaagaaggtgctggtgcaacgggat
ttccagctacagagcatgagcctgcaaacgcggttgcagcagaagttctggagccaggag
aggaacgtcttggtgcaggagtcccagcagctcaagcagatcctactgctggtcagcctc
aagctacgttggctgctcaagcagtggaggcttggcaagaagtttgatgcagagggcaaa
gacatattgcagattaacagcattaaggagcttcacctccctctggaggatgatggcctt
gcccctcaccatggagacaataagatgtcagcctccaaggagcagccttcaagtcccaca
aacaaagatcgcagccttccagagaataaccttcagcaggctagtggtttgaatgcgact
ttgtctgacctgaaggtggctctgcaggatttgagcaccgagctgcgagaggagcgtcag
agctcccaggagctaacgcagcagtttgcccgagctaaagcctcctgggaggtggagcgc
actgagctcaaaagcctcatcacccagctggaggggaaggcaggaaagatgtctgcagct
gggactgacatggatcctccacatctgaagggggctctgaagagggagcgtgaggagcac
cagcatctgctggcagactcatatgctgcagtgatggatctgaccaagcagctacagata
agcgagagaaactggagccgggagaagctggagcttctcgaacatttcaatcaggagagg
aaccagtgggagcagaggctccatgatgcccagagcaagggcacacagtctctcaatgac
aagggaatatccatagatgcaaccacaaatgaaacaaacttgcagagaacccaaccaatt
tcctccttgtcagactttgagagtttgctggatgccgcttctttccttccagatcatgag
gtcaatggaattgctgaggtaaaggctgggaagcaccagtttaatgaccttgtaatccgc
acagacctgagtgacctcagccagaagaactggaagtatctgagtagcgagtcagcttct
ctggagaaggctgagccttttaaaacctgggactgccccagcacaagctttccagagcta
gaactgagtgtgcagcatgtgcaaaggagttacactgccccagacaaaacaggtatccga
atatactacagccctccagctgtcaggaggatggaaaggaaggtcaaggatctgagctta
aatgatacccagctgggactcaagtttattggtgcaactaactcagaccaagcggtactg
cctccagtgacacaagcttcatcttcgcacttgtcgtcctcatatgagcagtggctaagc
tcactttccctacagcacagggacctactggagggcagggcgggcagctccgaggccctc
cacacccttgagatttctgcaaatctgagtgacgacatgaaggagatgaccaattgtgtg
agacaggccattcgttctagctctcttgagaggaaatgcagcaaagatgcaggaagtcag
actgtgggcttcaccaacacaggaacacaaacaactaagtttgtcagcgtgggcctgcag
acggagagtccagcctcctcaacctcccgaggggcaggatttcatgggaaggtgtggtct
ccacgcccatccacctcactcacttcagcacgatcacgccagatctccacatcactggag
aaggtgcatggccgcattgatcgaccctgctgctcaccaaaatatggctcacccaagctc
acaagaagggtctctgcttcatcctcatcctccaaactggagacatcttccacctcctca
agagatcggagcatgtggaatttgccaaaccgtagcatcgcccagagtggatctgcatgg
gctcggtccaccacaacccgtgacagtcctgtactcagcggcctcaatgatggtctgtcc
agcctcttcagtgttgtggagcacccctccagcatggagtcactctggaggggtgacaca
tgccctggaagacaagctgcaggcaagccctcttgccccagtgtcggcattagccttggt
gaccctggcactcagaagtacggcatcgtgcaggagttttttcaaaacatgtgtggacgg
acattgccaggagagaagactggagccatagatgagcccaagcctgagtgtctctctggt
gctctgatgtcaacagacagtgtcactaagatcgtcaataagagattcatgagacagaca
ctgcgggatgatgcggtagtcagtgggaaggagtctaatacaagcgccagtagcccagag
gattcatcttgtgactgcaaatcacagtccccgacctcttgttttgctcgctcctcccgc
tccactgttcgtcacatccacagccagtgcaagcaccgcttgcaggagactgccttggga
aatgacgagagattggatgtcagcaatgagtga
DBGET
integrated database retrieval system
