Pangasianodon hypophthalmus (striped catfish): 113530613
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Entry
113530613 CDS
T05759
Symbol
clstn1
Name
(RefSeq) calsyntenin-1 isoform X1
KO
K22659
calsyntenin 1
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
phyp04515
]
113530613 (clstn1)
Cell adhesion molecules [BR:
phyp04515
]
Cadherins
Cadherin related
113530613 (clstn1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CLSTN_C
Cadherin
Laminin_G_3
CDC45
FAM176
Laminin_G_2
PRIMA1
EphA2_TM
Cadherin_C_2
PFF1_TM
TMEM132_C
Motif
Other DBs
NCBI-GeneID:
113530613
NCBI-ProteinID:
XP_026776563
LinkDB
All DBs
Position
Unknown
AA seq
979 aa
AA seq
DB search
MRNSRSKPVCSAGGLLLLLLLGLLCAVEAAKVNKHKPWIETTYHGIVTENDDKVLLDPPL
IALDKDAPLRYAESFEVTFTKEGEICGFRIHGQNVPFEAVMLDKSTGEGVIRAKDKLDCE
LQKEHTFTIQAYDCGEGPDGANMKKSHKATVHIQVNDMNEYSPVFKEKSYKATVIEGKAY
DSILKVEAVDADCSFQFSQICSYEIVTPDVPFTIDKDGNIKNTEKLNYSKERAYKLTVTA
FDCGKNRASEDVLVKINVKPTCKPSWQGFNKRIEYEPGTGSLALFPSIRLETCEEPITSI
QASIELETNHIGKGCDRDTYSEKSLHRLCGASSGTVELLPSPSSATNWTAGLPTDNGHDS
DQVFEFNGTQAVKVPDGVVSTNLKEPFTISVWMRHGPGGREKETILCNSDKTEMNRHHYS
LYVHNCRLVLLLRQDPSEAENYKPAEFHWKLDQVCDKEWHHYVLNIEFPAVSLFVDGASF
EPFLVTEDYPLHASKIETQLTIGACWQDLSGHDNDTEAGSEPLTGGSAHMTQYFRGNLAG
LMIRSGKLENKKVIDCLYTCKEGLDVQLPEEVASAVKVDFNPNQSSLTLEGDDIESFEKV
MQHISYLNSRQFPTPGIRHLRVTTTVKCFNEETCISVPDAEGYVMVLQPEEPKISLSGID
HFARGAAEFESTEGVTLFPELRVVSTITREVEAEVEGEDEPTVQESVVSEEIMHNLDTCE
VSVVGEDLDGNHESLEVDLAQVQQRGLEISSSNMGMVITGVNTMANYEQVLHLIRYRNWH
TEALFDRKFKLVCSELNGRYISNDFKVEVNVIHTANPVEHANNAMYQPQFINQVKHASVD
LTGHNLANTHQASVVPSAATIVIVVCVSFLVFMIILGVFRIRAAHQRTMRDQENGKENEM
DWDDSALTITVNPMETYEDQHSSEEEEDEEEESEDGEEEDDITSAESESSEDEEGAEPED
QQGTNRQQQLEWDDSTLTY
NT seq
2940 nt
NT seq
+upstream
nt +downstream
nt
atgaggaacagcaggtccaagcctgtgtgctcagcgggcggactgctgctgctgctgctg
ctcgggctcttatgcgcggtggaggcagccaaagtcaacaaacataagccatggattgag
acgacatatcacggcatcgtgacagaaaatgatgacaaagttctgctggaccctccactg
atagcgctggataaagacgccccattgcgttatgcagaaagttttgaagtgaccttcacc
aaagaaggggagatttgcggcttccgtattcacggccagaatgttccgtttgaggcggtg
atgttggacaagtccacaggcgaaggagtgatccgggccaaggacaagctggactgtgag
cttcagaaggagcacacattcaccatccaggcctatgactgtggagagggaccagatgga
gccaacatgaagaaatctcacaaggcaactgtccatatccaagtgaacgacatgaatgag
tactcacccgtgttcaaggagaagtcatataaggctacggtaatcgagggcaaagcgtac
gacagcatcctgaaggtggaggcagtggatgctgactgctccttccagttcagtcagatt
tgcagctatgagatcgtcacccctgacgtgcccttcaccattgacaaggacggcaacatc
aagaacactgaaaagctgaactacagtaaggagcgtgcgtacaagttgacagtgaccgcc
ttcgactgtgggaagaaccgtgcctctgaggacgtcctcgtcaaaatcaatgtcaaacca
acctgcaaaccgagctggcaaggctttaataagagaattgagtacgagcctggcacagga
agtctggccctgttccccagcattcgtctggagacctgcgaggagccgatcacctccatc
caggccagcatcgagctggagaccaaccacatcggcaagggctgcgaccgagacacatac
tctgagaaatccctgcatcgtctgtgtggtgccagttccggcactgtggagctgctgccc
tctcccagcagcgccaccaactggaccgcaggcctgcccactgacaacggccatgacagc
gaccaggtctttgagttcaatggcactcaggctgtgaaggttcctgatggtgtggtgagc
acaaacctgaaggagcccttcaccatctcagtgtggatgaggcatggacctggtggccgg
gagaaagaaaccatcctctgcaactctgataagacagagatgaacagacaccactactcc
ctgtatgtgcacaactgccgtctggtgctgctcctgcgtcaggacccgagcgaggcagag
aactacaaaccagctgaattccactggaaactcgaccaagtctgtgataaagaatggcac
cactacgtgctgaacatcgagttccctgccgtgtctctgtttgtggatggagcttccttc
gagcctttcctggtcacagaggattaccctctccacgcctccaagattgaaactcagctc
actattggtgcctgctggcaagacctctcaggacatgacaatgacacagaggcaggctca
gagcctttgacaggtggcagcgctcacatgacccagtacttccgtggcaatttggccgga
ctcatgatccgctctggtaaactggagaataagaaggtgatcgattgcctgtacacgtgt
aaggagggtctggatgtgcagctcccggaggaagtggcttctgctgtgaaggtggacttt
aaccccaatcagtcttctctaactctggagggagatgatattgagagctttgagaaagtc
atgcagcacatctcctacctgaactccaggcagttccccacaccaggaatacgccacctg
cgtgtcaccaccaccgtcaagtgctttaacgaggaaacgtgcatctcggtgcctgatgca
gagggctatgtgatggtccttcagccagaggagccaaagatcagcctgagtggaatcgac
cactttgcacgcggagcggctgagtttgagagcactgagggtgtgacgctgttccctgaa
ctgcgtgttgtcagcactatcacacgtgaggtggaggctgaggttgagggagaggatgag
cccacggtgcaagagtctgtggtttctgaggagatcatgcataacctggacacgtgtgaa
gtgtctgtagttggagaagatctggatggaaatcacgagagtctggaggtggatttggct
caggttcagcagagaggcctggagattagctcctccaacatgggcatggtcatcactggt
gtaaacaccatggccaactatgagcaggtcctgcacctcatccgttacagaaactggcac
acagaggctctgtttgataggaagttcaagctggtctgctcagaactcaatggccggtac
atcagcaatgatttcaaggtcgaggtcaatgtgattcacacagctaacccagttgagcat
gctaataatgccatgtatcagcctcagttcatcaaccaagtcaagcatgcctcagtggac
ctgactggacacaacctggccaacacacatcaagcttcagttgtccccagtgctgccaca
atcgtcatcgtggtgtgtgtaagcttcctggtgtttatgattattctgggagtgttcagg
atccgtgccgctcaccagcgcaccatgagggaccaggagaatggcaaagagaacgagatg
gactgggatgactctgccctcaccatcacagtcaatcctatggagacttatgaggatcag
cacagcagcgaagaggaggaggatgaggaagaggagagtgaagacggcgaggaggaagac
gacatcaccagcgcagagtcagagagcagcgaggacgaggagggggcggagcctgaggac
cagcagggcaccaaccgacagcagcagctggagtgggatgactccactctgacctactga
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