Pangasianodon hypophthalmus (striped catfish): 113531022
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Entry
113531022 CDS
T05759
Symbol
prpf4
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113531022 (prpf4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
phyp03041
]
113531022 (prpf4)
Spliceosome [BR:
phyp03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
113531022 (prpf4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40_Prp19
WD40
Beta-prop_THOC3
Beta-prop_WDR3_1st
WD40_CDC20-Fz
Beta-prop_WDR3_2nd
WD40_Gbeta
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_WDR36-Utp21_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR36-Utp21_1st
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
Beta-prop_WDR75_1st
ANAPC4_WD40
WD40_MABP1-WDR62_1st
PRP4
Beta-prop_Aladin
WDR90_beta-prop_4th
Beta-prop_EML
NBCH_WD40
Beta-prop_DCAF4
Beta-prop_TEP1_C
Beta-prop_EIPR1
Beta-prop_IFT122_1st
Beta-prop_RIG_2nd
Beta-prop_SCAP
Beta-prop_WDR41
Beta-prop_Vps41
WD_LRWD1
WD40_like
Beta-prop_IFT140_1st
Beta-prop_WDR35_TULP_N
Beta-prop_Nup120_160
Beta-prop_WDR11_1st
DUF7779
Tricorn_2nd
Motif
Other DBs
NCBI-GeneID:
113531022
NCBI-ProteinID:
XP_026777277
LinkDB
All DBs
Position
Unknown
AA seq
507 aa
AA seq
DB search
MSDEDEAPLVKKARIFYGSIEEKEKERLGREGAISSGKDAIKAGIEAGNINISSGESLEL
EERVSERQAEVLAEFERRKRARQITVSTDDTEVKACLRALGEPITLFGEGPAERRERLRN
ILSVVGPDALKKSKKDEEKAKRSQEDSQQTWYHEGPETLIEARIWLAKYSLPKAVERLNA
AQAQREIPESTRTVRQQELHKTLRNLNNFCSQIGDDRPISYCQFSPNSKLLVTASWSGLC
KLWNIPDCSLVRTLRGHNTNVGAVSFHPQATLTLDESDVNLASCAADGSVKLWSLDSDEP
VADIEGHFMRVARVAWHPSGRFLGTTCYDNSWRLWDLEVQEEILHQEGHSKGVHDLHFHP
DGSLAGTGGLDSFGRVWDLRTGRCVMFLEGHLKEVYAVNFSPNGFHVATGSGDNTCKVWD
LRKRKCIYTIPAHQNLLSSVKFQPTDGHYLLTGSYDNMAKVWTHPGWSPLKTLAGHEGKV
MGLDLSPDGQLIATCSYDRTFKLWVAD
NT seq
1524 nt
NT seq
+upstream
nt +downstream
nt
atgtcggatgaggacgaagcccctttggtgaaaaaagctcgaatcttctatggaagtatt
gaagaaaaggaaaaggagcgtcttggtcgtgagggagccatttcatccgggaaagatgcg
attaaggctggaattgaggctgggaatattaacatctccagtggtgagtccctggagctg
gaggagcgtgtaagcgagcggcaggctgaggtactcgctgaattcgagcgtagaaaaaga
gcccgacaaatcacagtctctactgatgacaccgaagtcaaagcgtgcctgcgtgcactg
ggagagccgatcacgctgttcggcgagggccccgctgaaagacgagagaggttgaggaat
attttgtcagtagtgggtccggatgctctgaagaaatcgaaaaaggacgaagagaaagcg
aaacgttcccaagaggactctcagcagacgtggtaccacgagggtcccgagacgctgatt
gaggcacgtatctggctggccaaatattcactgcccaaagctgtggagaggctgaatgct
gcacaggctcagagagagattcctgaatctacacgcaccgtacgacaacaagagcttcac
aagacgctcaggaacctgaataacttctgcagtcagattggagacgatcgtccgatatcc
tattgccagttcagcccgaactccaaactgttagtcaccgcatcatggagcggtctgtgc
aaactctggaacattccagactgtagtctcgtccgcacgttaagaggtcacaataccaat
gttggagcagtcagcttccatccacaagccacgctcactcttgacgagtcagatgtcaac
ctggcctcctgtgctgcagacggatctgtcaagctgtggagtttagatagtgatgagcct
gtcgcagacattgagggtcacttcatgagggtggctcgcgtagcgtggcatccttctggt
cgctttctgggcacaacatgctatgacaactcatggcgtctgtgggatctggaggtccag
gaggagattcttcaccaggaaggtcacagtaaaggtgtccatgacttgcatttccatcct
gatggctccttagcaggaaccggtggtctggattcatttggtcgcgtgtgggacctgagg
accggtcgctgtgtcatgttcctggagggtcatcttaaagaggtctacgcagtcaacttc
tccccaaatggctttcacgtggctacggggagcggcgacaacacgtgtaaagtgtgggac
ctgcggaagaggaagtgcatttacaccatacccgctcaccagaacctgctgtcctccgtc
aagttccagcctacagacggtcattacttgctaacgggttcttatgacaacatggctaaa
gtgtggactcaccctggatggtctcctctgaagaccctggcaggacacgaaggcaaagtg
atgggactggacctgtctcctgacggacagctcattgcgacctgctcgtatgaccgcacc
ttcaaactctgggtggctgattga
DBGET
integrated database retrieval system
