Pangasianodon hypophthalmus (striped catfish): 113531137
Help
Entry
113531137 CDS
T05759
Symbol
exosc2
Name
(RefSeq) exosome complex component RRP4
KO
K03679
exosome complex component RRP4
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113531137 (exosc2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phyp03019
]
113531137 (exosc2)
Messenger RNA biogenesis [BR:
phyp03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
113531137 (exosc2)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
113531137 (exosc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRP4_S1
KH_6
ECR1_N
ECR1_N_2
EXOSC1
Lantibiotic_a
Med16_C
RRP40_S1
Motif
Other DBs
NCBI-GeneID:
113531137
NCBI-ProteinID:
XP_026777465
LinkDB
All DBs
Position
Unknown
AA seq
294 aa
AA seq
DB search
MAVDMRLPARKQASLPASLSSSDGKHLVVPGDVITSDTGFMRGHGTYMDDEKLTASVAGE
VERVNKLICVRPLKTRFNGEVGDVVVGRITEVQQKRWKVETNSRLDSVLLLSSVNLPGGE
LRRRSAEDELAMRDYLQEGDLISAEVQSVFSDGALSLHTRSLKYGKLGQGVVVQVSPSLI
KRQKTHFHNLTCGASVILGNNGYIWIYPTPGQQDEEAGGYYTSLEPVPLSDREVISRLRN
CLLALAAHKVMLYDTSILYCYESSLTHQIKDILKPEIMDEIVMETRQRLLDQEG
NT seq
885 nt
NT seq
+upstream
nt +downstream
nt
atggcggtagatatgagattgcctgcgaggaaacaagcgtctctgccagcttctctttct
agctcggacggtaaacacttggtggttccgggggatgtgatcacatcagacacaggcttt
atgagaggccatggaacgtacatggatgatgaaaaactcactgcttcggtggctggtgag
gtggaacgagtcaacaaactcatctgtgtgaggccactgaagacgaggttcaatggtgaa
gtcggtgatgtggttgttggtcggatcactgaggttcaacagaaacgctggaaagtggag
acgaactcgcgactggactctgtattgcttctgtcttcggttaatcttcctggaggagag
ttgaggaggcgttcggcagaagacgaacttgccatgagagactatcttcaagaaggggac
ctcattagtgcagaggtacagtctgtgttttcagatggagccctctctctccacacacgc
agcttaaagtacggcaagctgggtcagggtgtggtcgtgcaagtatcgccctcgctcatc
aagagacagaaaacccatttccacaatctgacatgtggagcgtccgtaatactagggaac
aacggctatatttggatttaccccacaccggggcaacaagatgaagaggcaggaggatat
tacacaagcctagagcccgtccctctctcagaccgggaagtcatttctagactgagaaac
tgtttactggctctggcagcccacaaagtgatgctgtacgacaccagcatactctactgc
tatgaatcctctctgacacaccagatcaaagacatcttgaaaccagagatcatggacgaa
attgtgatggagacacggcaacgacttcttgaccaggagggttag
DBGET
integrated database retrieval system
