Pangasianodon hypophthalmus (striped catfish): 113531158
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Entry
113531158 CDS
T05759
Symbol
lig3
Name
(RefSeq) DNA ligase 3
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
113531158 (lig3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
phyp03400
]
113531158 (lig3)
Enzymes [BR:
phyp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
113531158 (lig3)
DNA repair and recombination proteins [BR:
phyp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
113531158 (lig3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
113531158
NCBI-ProteinID:
XP_026777494
LinkDB
All DBs
Position
Unknown
AA seq
999 aa
AA seq
DB search
MHGLGFCKAARTLCRTFRLCLIQSTLPLLQHCRPVIHAWGFALSAKHPSRHFSLSSPSFL
AVSRATWQDDRPSMAEQRYCVEYAKRGQAGCKKCKEKIVKGLVRIGKIVPNPFSESAGEM
KEWYHVKCIFEKLERARATTKKIEDITDLEGWEELQDEEKELINKLVADLTAKANASPKK
KVQAKLNTSGQITSPPADPTVNAPRKFSGFTATKAGPSSSRPGPSPAKASQGSALSAQFC
QPDHKDCLFREFRKLCAMVAEKSSYNAKTEIIRDFLKKGCGGDKFKGDLYLTVKLLLPGV
VKSVYNLNDKQIVKLFSRILNCNQDEMVCDLAQGDVSETVRMFFEASKSFPPSTKSLLTI
QEVDASLTRLAQLTKEDEQQAELEAIAKKCTGNDLKCYIRLVKHDLKINSGAKHVLDALD
PNAYDAFKASRNLGDVVDRVIRNQQEATNGGGPRKLLSVEATLMTPVQPMLAEACKSIEY
AMKKCPNGMYSEIKYDGERVQVHKNGDHFSYFSRSLKPVLPHKVAHFKEYIPQAFAGGHS
MILDAEVLLIDTKTSKPLPFGTLGVHKKAAFQDAQVCLFVFDCIYFNGVSLMDKPLCERR
KFLHDNMVEVPNRILFSEMKHVTKAADLAEMITRVIREGLEGLVLKDVKGPYEPGKRHWL
KVKKDYLNEGAMADTADLVVLGAFYGTGSKGGIMSSFLMGCYDPASKKWCTVTKCSGGYD
DATLARLQKELDVIKIGKDPSKIPPWLNIIKNYYPDFLIRDPEKAPVWEITGAEFSKSEM
HTADGISIRFPRCTRMRDDKDWKTATNLPQLKELYRISKERCDFEVTAGPSTSSKDDKGS
SGADSGGSSPSTSNGAASSNKAKNGHTPKPKPVKPSTPSAAKRKLPTERHDAKKIKVETV
HSNGQSKAKASPAKAADPQPEKTLLNIFTGVKLHLPESVQEFEKLRRYFLAYDGDLVPDY
DAASATHTLAEPEEGSRVQKVSSNWIWQCIRKRRVVPPC
NT seq
3000 nt
NT seq
+upstream
nt +downstream
nt
atgcatgggctcggcttctgcaaggcagcaagaaccctgtgcaggacctttcgtctgtgc
ctgatacaaagcacgcttccactcctgcagcactgtcgccctgtaatccacgcttggggc
tttgctttgtcagcaaaacatccatcgagacacttcagtctctcatctccatctttcctt
gctgtctctcgggccacgtggcaggacgaccggccgagcatggccgagcagagatactgc
gtggagtacgccaagcgtggccaggcaggctgcaaaaaatgcaaggagaaaatcgtaaag
gggctggtgcgcatcgggaagatcgtgcccaacccgttcagcgagtctgcaggagagatg
aaggagtggtatcacgtgaagtgcatcttcgagaagctggagcgtgctcgggccaccacc
aagaagatcgaggacattactgacctggagggctgggaggaattgcaagatgaggaaaag
gagctgataaataagcttgtagcagacctgactgccaaggctaacgcaagtccaaagaag
aaggtgcaagccaagttaaacaccagcggccagataacaagtcctcctgctgatccgacg
gtgaacgcgccacgcaagttttccggcttcacagcaacaaaggcaggtccgtcctcatcg
cgtccaggcccgtctcctgctaaagcctctcagggcagcgctctgtccgctcagttttgc
cagcctgaccataaggactgcctgttccgcgagttccgcaagctctgcgccatggtggcc
gagaaatccagctacaacgccaagaccgagatcatcagggacttcctaaagaagggttgt
ggtggagacaagtttaagggagatctctacctcacagtgaagctgctcctcccaggcgta
gtgaaaagcgtttacaacctcaacgacaagcaaatcgtcaaactcttcagccgcatcctg
aactgcaaccaggacgagatggtgtgcgacctagcacagggagacgtttccgagacagtg
aggatgttttttgaagccagcaagtcgtttcctccttcaaccaagagtctgctgaccatc
caggaagtggacgcttcgctaacccgcctggctcagctcactaaagaagatgagcagcag
gcagaactggaggccatcgcgaaaaaatgcacagggaatgacttgaagtgttacatccgg
ctggtgaaacatgacctgaagattaattctggtgccaaacacgtcctggatgctttagac
cccaacgcctacgacgccttcaaagcctctcgaaaccttggtgacgtggttgacagagtc
atacgcaatcagcaggaggcaacgaacggcggcggcccgaggaagctcctgagtgtcgag
gctacacttatgacccctgtgcagcccatgctggcagaagcctgcaagtccattgagtac
gccatgaagaaatgccctaatggaatgtactcggagatcaagtacgacggcgagcgcgtg
caagtgcacaagaacggagaccacttcagctacttcagccgcagcctcaaacccgtgctg
cctcacaaggtggcccattttaaagagtatatacctcaggcttttgctggaggccacagc
atgattctagacgctgaagttctcctgattgataccaagaccagtaagcctctgccattc
gggacattaggagttcacaaaaaagcggcctttcaagacgcacaagtgtgcctgtttgtt
tttgactgcatttattttaatggtgtcagcctcatggacaagccgctttgcgagagaaga
aaattccttcatgataacatggtggaagttccgaacaggattctgttttcggagatgaaa
cacgtcacaaaagctgctgacctggctgaaatgatcacgcgagtcatcagagagggattg
gagggactggttctgaaagacgtcaaggggccatatgaacctggtaaacgccactggctg
aaggtgaagaaagactacctgaatgaaggagcaatggcagacactgcagatttagtggtt
ttgggggcgttttatggaaccggctcaaaaggtggaatcatgtccagtttcctcatgggc
tgctacgatccggcgtcgaagaaatggtgcacagtgacaaaatgctccggaggctacgac
gacgccacgctagccagactgcagaaggagctggacgtcattaaaattggcaaggatccc
agcaagatcccaccatggctaaacataatcaagaactactatccggattttctcatccga
gatcctgagaaagccccagtttgggagatcacaggagccgagttctccaagtcggaaatg
cacacagccgacggcatctccatccgtttcccacgatgcactcgtatgcgtgacgataag
gactggaagacggccaccaaccttccccagctcaaggaactttaccgtatctcgaaggag
aggtgcgacttcgaggtgacagcagggccgtctacaagcagcaaagacgacaagggctca
tcaggagcagacagcggaggcagctcaccgtccacctccaatggagcagcaagctcaaac
aaagccaaaaatggtcacactccaaagccaaagccggtgaaaccttcaactccatccgct
gccaagaggaagctgcccactgagcgacacgacgcaaagaagattaaggtcgaaacagtt
cacagcaacgggcaaagcaaagcaaaagcttctccggctaaggcagctgacccacagcct
gaaaagaccctgctaaacatcttcaccggagtaaagctgcacctcccggaatcggtgcag
gagtttgagaagctgcggcgatactttttggcgtacgatggcgatctcgttccggattac
gacgctgcctccgcaacacacacgttagccgagcccgaggagggcagccgggtccagaaa
gtcagctccaactggatctggcagtgcataaggaaaagaagagtggttcccccctgctga
DBGET
integrated database retrieval system
