Pangasianodon hypophthalmus (striped catfish): 113531609
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Entry
113531609 CDS
T05759
Symbol
ythdc2
Name
(RefSeq) 3'-5' RNA helicase YTHDC2 isoform X1
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
phyp03041
]
113531609 (ythdc2)
Enzymes [BR:
phyp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
113531609 (ythdc2)
Spliceosome [BR:
phyp03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
113531609 (ythdc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
HA2_C
OB_NTP_bind
Helicase_C
R3H
DEAD
HA2_N
AAA_19
Ank_2
ATPase
nSTAND3
AAA_22
PhoH
ABC_tran
AAA_7
SRP54
AAA_23
AAA_29
FtsK_SpoIIIE
AAA_30
TrwB_AAD_bind
Motif
Other DBs
NCBI-GeneID:
113531609
NCBI-ProteinID:
XP_026778234
LinkDB
All DBs
Position
Unknown
AA seq
1442 aa
AA seq
DB search
MLAGSVCMLVQHTAESVMSQSKAASQKANMNPSKLSSSLKAKGLKDIRIDEEVKIAVNIA
LERFQYSDQREMEFPSSLTSTERAFIHRLAQSLGYISKSRGKGIHRFLMIWKKDRPESAQ
SIMTFSLTHNSKHVVRNLLQRFPITSKERTDLLQRTERGLALSPEAAGNGRDKNRTSGRL
NNGIPQVPQRRGPSELECFRRALPVYERQEEIVTAIKENQVVLIVGETGSGKTTQIPQFL
LDDCSQMGNPCRIFCTQPRRLAAIAVAERVAAERGESVGQTIGYQIRLESRVSPKTLLTF
CTSGVLLRTLMAGDAVLSTVTHVIVDEVHERDGLTDFLLTKMRDMLQKMPSLKLILSSAA
LDVDLFIRYFGQCPIIYIKGRPYDVKQLFLEDILRTTGYTNKEMAKYKAEMQKEAKQQTS
LTEWCEVKAGVSPPVAQKNRQSAGVLEDADLLDNGGDSVFSQMSEKDVTSLEPWLLKEMD
ACISSIFLQQEADAFVQLFNLIVNENISVDYRHSETSATPLMVAAGRGFIGQMEQLLSMG
ASVHVKASNGWTALDWAKHFNQTEAVDLLESHISSLEAGQLDESSLVQSASGELSAQDKE
LLKAYHHSFDDEKVDLDLIMHLLFNICQSSDEGAVLIFLPGYDEIVGLRDRILFDDKRFA
DHQHRYQVFTLHSNMQTSDQRKVLKPTAGGVRKIILSTNIAETSITVNDVVFVIDSGKVK
EKAFDALNHVTMLKMVWISKASSLQRKGRAGRCRPGICFHLFSRLRFNNMLEYQVPQLLR
MPLQELCLHTKLLAPITCSIAEFLAKAPEPPHLLTVKNAVQMLKTIDAMDPWEDLTELGY
HLADLPVEPHLGKMVLCAVVLKCLDPILTIACMLSYREPFVLPSQASQKRAAMLCRRCFA
ANTFSDHMALLRAFQAWQKARSDGWERSFCEKNFLSQATMEIIIRMRTQLLGQLRAIGFV
RARGCSDIRDVNLNSENWAVVKAALVAGMYPNLVHIDRDNQTLRGAKEKKVRFHPTSVLS
QPQYKKIPPANAQAAAVQSLPTDWLIYDEMTRAHRIASVRCCTAVTPLTVAVFGGCAKLP
STAFQEPSSPRVADDGLCESSDSDSETRSTDQLAQMKIDEWLNFKLDQEMASMVFQLRQR
WHSLFLRRIRCPSKPWSQLDEATIRAMVSILGAEEQAAGLQQPTGIGQRPKPISPDEPQH
QSNSWRSGHRSVMEQSHEAPTPDRSPKVPSAVSLSKSQRDKSAVFSKRSADDHLPVKSDS
PSLTSPSASPSSSSSIKGPAVLMSPLAGVSKSPSLRPRPSVRYFIMKSSNLRNIELSQQR
GIWSTTPNNEHKLNRAFQENGTVFLIFSVQGSGHFQGYARMSSEIGSERCKDWGATGLGG
VFSVEWIRKESLPFQVTHQLLNPWNDNKKVQISRDGQELEPQAGAQLLQLWDRFSVKQQH
EL
NT seq
4329 nt
NT seq
+upstream
nt +downstream
nt
atgctagccggctcagtgtgtatgctagtgcaacacacagcagaaagtgtcatgtctcag
tcgaaagccgcctctcagaaagcaaacatgaatccatcgaagctgtccagttcactaaaa
gccaaagggctgaaagacatcaggattgatgaagaagttaaaattgcggtgaacattgcg
ctggagaggttccagtacagcgaccagagagagatggagtttccttcttcactgaccagc
acagagcgagcatttatacatcgccttgcgcaatccctgggttacatttcaaaaagcaga
ggtaaaggaatacaccgctttctcatgatatggaaaaaggaccgtccagagtcagcgcag
tccattatgacctttagtctcacccacaattccaagcatgtggttcgaaacctgctgcag
aggttccctattactagtaaagagcgcactgatctgctccaacgcaccgagagagggctc
gctctttctccagaagctgctggtaatggacgagacaagaacaggacaagcgggcggctg
aataacggcatccctcaggtccctcagaggagaggtccttctgagctggagtgttttcgg
agagcgctgcctgtctacgagcggcaggaggagatcgtgacggccatcaaggagaaccag
gtggtgctgatcgtgggtgaaacgggttcaggaaaaaccacccagattcctcagttcctg
ctggacgactgcagccagatgggaaatccctgtcggatcttctgtacacagcccaggagg
ctggcagccatcgctgtggcggagagagtggcggcggagagaggagagagcgtcggccag
accatcggctaccagatccgcctggagagcagagtttctcccaagactttactgactttt
tgcacaagtggcgtgctgctcagaacactgatggctggagacgccgtcctctccaccgtc
acacatgtcattgtggacgaggtccacgagcgggacggcctgacagattttctcctgact
aagatgcgggacatgctgcagaagatgccctctctgaagctcattctttccagtgctgct
ctggatgtggatcttttcatcagatactttggccagtgcccgattatttacatcaaagga
cggccatatgacgtcaaacaactttttctggaggacattttgcggaccactggctacaca
aacaaggagatggccaaatataaggcagagatgcaaaaagaagcaaagcagcagacgtct
cttacagagtggtgtgaggtgaaagcgggtgtatccccaccagtggctcagaagaaccgg
cagtctgctggcgtcctggaggacgctgacctgctggacaatggaggggacagtgtcttc
agccagatgagtgagaaagacgtgacgtcgctggagccatggctgctgaaggaaatggac
gcttgcatttcaagtatctttctgcagcaggaggctgatgcctttgtgcagctttttaac
ctgattgtcaatgagaacatcagtgtggattacaggcacagcgaaacgagtgccacacct
ctgatggtggccgcagggagaggcttcatcggccagatggagcagcttctcagcatgggg
gccagtgtgcatgttaaagcttctaatggctggactgctcttgactgggccaaacacttc
aaccagactgaagcagtagatctgcttgagtcacacatctcgtctctggaggctggtcag
ctggacgagtcgtccctggtgcagtcagccagtggggagctcagcgctcaggacaaggag
ctgctcaaggcttaccaccacagctttgatgatgagaaagtggacctggacctcatcatg
cacctgctcttcaacatctgtcagagctctgatgaaggtgcagtcttgatatttttgcca
ggatatgatgagatagttggactgcgagaccgcattctttttgacgataaaagatttgca
gatcatcagcataggtaccaggtgttcacactacactccaacatgcagacttcagatcag
aggaaagttctgaaaccaactgcaggcggggttcgcaaaattattctctcgaccaacatc
gctgaaacaagtatcaccgtcaacgatgttgtttttgttattgactctggcaaggttaaa
gagaaagctttcgatgccctgaatcatgtgaccatgctaaagatggtgtggatatcaaaa
gcaagctcactacagcgtaaaggaagagccggacgttgcaggccgggaatctgtttccat
ctgttcagcaggctgcgcttcaataacatgctggagtatcaggttcctcagctgctgcgt
atgcctctgcaggaactctgtcttcacactaaacttttggcccctattacctgctccatt
gctgagttcctcgccaaagccccagagccaccacacctgctcactgtcaagaacgctgtg
cagatgctcaagaccatagatgccatggacccatgggaggacctgactgagcttggctac
catctagctgacctgcctgtggagccacacctggggaagatggtgctatgtgcagtggtg
ctcaagtgcttggacccgatcctcaccattgcctgcatgctgtcctacagggaaccattt
gtgctaccatctcaggcttcacaaaaacgagccgccatgctgtgcaggagatgctttgct
gccaacaccttcagtgatcacatggccttgcttcgcgcttttcaggcatggcagaaggcc
cgcagtgatggctgggagaggtctttctgtgagaaaaacttcctgtcacaagccaccatg
gaaatcatcatcaggatgcgcacccagctgctgggccagctccgtgccataggtttcgtt
cgcgctcggggttgcagtgatatccgggatgtaaatctgaactccgagaactgggcagtg
gtgaaggcggcgcttgtagcaggcatgtaccctaacctggtccacatagaccgcgacaac
caaacactccgaggtgccaaagagaagaaggttcgcttccaccctacatccgtcctgagc
caaccccaatacaagaagattcctccagctaacgcccaagcagcagcagttcagtctctg
cctacagactggttgatctatgacgagatgacacgagcacacaggatagccagcgtgcgc
tgctgcactgcggtcacgccgctcaccgtggctgtgtttggagggtgtgccaaactgccc
agcacggcgtttcaggaaccttcctcaccccgagtagcagatgatggtctgtgtgagagc
agtgacagtgacagtgagactcgctccacagatcagctggctcagatgaagatcgatgag
tggcttaacttcaaattggatcaagagatggcgtccatggtgttccagctgaggcagcgc
tggcatagcttgttcttgaggaggatccgttgcccctctaagccgtggtcccagctggac
gaggcgacgattcgggccatggtgtccatactgggtgccgaagaacaggcagccggcctg
cagcagcccacgggtattggccagagacccaaacccataagtccagatgagcctcagcac
cagtcaaacagctggaggagtggacacaggagtgtcatggagcagagtcatgaggctccc
acaccagataggtctccaaaagtgccatctgctgtttctctgtctaagagccaaagagat
aaaagtgctgtcttttccaaacgttcagctgatgaccatctgccagtaaagtcagacagc
cccagtttaaccagtcccagcgccagtccctcgtccagttcctcaataaaaggaccggcc
gttcttatgtcacctttagctggggtttccaagtcgccatcgctgaggcccagaccatca
gtgcgttacttcatcatgaagagcagcaacctgaggaatatcgagctctcccagcagagg
ggcatctggtccactacacccaacaacgaacacaaactgaaccgagccttccaggagaac
ggcaccgtcttccttatcttctctgtgcaaggctccggacacttccagggttatgctcgg
atgagttcggagattggctcggagcgctgtaaggactggggtgcgaccggtctgggagga
gtcttcagtgtggaatggatccgtaaagagagtctccctttccaagtcactcaccaactc
ctcaacccctggaacgacaacaagaaagtgcagatcagccgagacggacaggagctggaa
cctcaggctggagcacagctgttgcaactctgggatcgcttctccgtcaaacagcagcat
gagctttga
DBGET
integrated database retrieval system
