Pangasianodon hypophthalmus (striped catfish): 113531629
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Entry
113531629 CDS
T05759
Symbol
ddx54
Name
(RefSeq) ATP-dependent RNA helicase DDX54
KO
K14808
ATP-dependent RNA helicase DDX54/DBP10 [EC:
5.6.2.7
]
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
phyp03009
]
113531629 (ddx54)
Enzymes [BR:
phyp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
113531629 (ddx54)
Ribosome biogenesis [BR:
phyp03009
]
Eukaryotic type
Pre-60S particles
Helicases
113531629 (ddx54)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DBP10CT
ResIII
DNA_pol3_chi
Motif
Other DBs
NCBI-GeneID:
113531629
NCBI-ProteinID:
XP_026778270
LinkDB
All DBs
Position
Unknown
AA seq
856 aa
AA seq
DB search
MAQRKKRLWKKKPSAHREPDVDSDGGDFELAAEIKDDVVFGKKLPRFPTSSDCLSDVEPD
TREMVRAQNKKKKKSGGFQSMGLSYPVYKGVMKKGYNVPTPIQRKTIPVILDGKDVVAMA
RTGSGKTAAFLVPMFERLKGPQAQTGARALILTPTRELALQTMKFTKELGRFTGLKTALI
LGGDSMDDQFAALHENPDIIIGTPGRLMHVVMEMNLKLQSVEYVVFDEADRLFEMGFTEQ
LQEIIRRLPETRQTLLFSATLPKLLVEFARAGLTEPVLVRLDVDSKLSDQLKLSFFHLRL
DDKPALLLYLLRNVVKPQEQTVVFVATKHHVEYLNQLLTSQGIECAYIYSALDQTARKIN
IGRFVHRKAMVLLVTDVAARGIDIPLLDNVINYNFPSKAKLFLHRVGRVARAGRSGRAFS
LVCPDEVPFVYDLHLFLGRPLHLATIDHSQDADGVLGRVPQSILDDEDTHVLTAHENCLD
LENLKRISENAYKQYLKSRPNPSPESIKRVKNSDLSSIAVHPLLGSGLEKMELERLQMVD
SIKAYKSKSTIFEINSNNKTSASEVMRTKRSRDSRLVEKFKRTREEMQAESQQNRPAIQN
SATTQLHHGEEEDDDDEDLQGVFSKVVGGKKRKQDENMDVDRPKSKKNRQSGRDEEFYIP
YRPKDFESERGLSLAAEGSSFEHQASSAVLDLMGDENNTLDQHKKMMRWDRKRKRFVRDT
GKEDKKSKIKTESGQVVSAKKSKKNFYEEWKKKYKVDDADDSDGENGGGRGPKFGGRRGY
RGAGSQPQNKNGSRVRSELKSSEQILKQRKRQSKQQFLQSGGLKKLRGRNKQRLNDVMKS
GFGRGRFKKGKMRKRL
NT seq
2571 nt
NT seq
+upstream
nt +downstream
nt
atggcgcagagaaagaagagattgtggaagaagaagccctctgcacacagagagccagac
gtggactcagatggaggagacttcgagttagctgctgaaattaaagacgacgttgtattt
ggtaaaaagctgcctcgcttccccacgtcttctgattgcctgtcggatgtagaaccggac
acgagagagatggtgcgtgctcagaacaagaaaaagaaaaagtctggaggctttcagtcc
atgggtctcagctaccctgtctataaaggggtgatgaagaagggctacaatgttccgacc
cctatccaaagaaaaactattcctgtcatcctggatggtaaagatgttgttgccatggca
agaacagggagtgggaagacggctgcgttcttggtgcccatgttcgagaggttgaaggga
cctcaagctcagacgggcgctagagctctgatcctcacacccacgagagagctggcacta
cagaccatgaagttcactaaagagctgggcaggtttactgggctaaaaacggcactaatc
cttggtggagacagcatggatgatcagtttgctgctctacatgaaaatccagacatcatc
attggtactcctggccgtctgatgcacgtcgtcatggaaatgaacctgaaactgcagagt
gtggagtacgtggtgtttgacgaagcggatcgattgtttgaaatgggtttcactgagcaa
ctgcaggagatcattagacggctccctgaaacccggcagacccttctgttctccgccaca
ctgcccaaacttcttgtggaatttgctagagcaggattaacagaaccagtcttggtccgt
ctagatgtcgacagtaagctcagcgatcagttaaagctgtcattttttcacctgcgtctg
gatgacaagcctgcactgttgctgtatcttctgcgtaatgttgtgaagcctcaggagcag
acagtcgtatttgtggctaccaaacaccacgtggagtacctcaaccagctactgacttca
caaggaatcgagtgtgcgtacatatacagcgctttggaccagacggccagaaagatcaac
attggtcgctttgtccaccgcaaagcaatggtgctgctggtgacggacgtggcagctcgt
ggtatcgacatcccgctcctggacaatgtcatcaattataacttcccctccaaggccaag
ctcttcctgcacagagttggtcgtgtagcccgtgctggcaggagtggcagagccttcagc
ctggtgtgcccagacgaagtgccttttgtttatgaccttcacctcttccttggacgacct
ttgcatcttgcaaccattgatcactcacaggatgctgatggagtgttgggtcgcgtccca
cagagcatcttggatgacgaggacacgcatgtccttacggctcatgagaactgtctagac
cttgagaacctcaaacggatctctgagaatgcttacaagcagtacctgaagtcccgaccc
aacccctcaccagaatctatcaagcgggtgaagaactccgatctgtcctccatagctgtt
catccactgctagggtcaggacttgagaagatggagctggagagactgcagatggtcgac
tcgatcaaggcttacaaatcaaaatctactatatttgagatcaactccaacaacaaaacc
agcgccagtgaggtaatgaggacgaagcgctctcgggacagccgtctggtggaaaaattc
aagaggacaagagaagagatgcaggccgagagtcagcagaaccgtccagctattcagaac
tctgccacaacacaactgcaccatggggaggaagaggatgatgatgatgaagaccttcag
ggtgtgttctcgaaagtggtcggaggaaagaaacggaaacaggacgagaacatggatgtg
gacagacctaagagcaaaaagaacaggcagtcgggtcgagacgaagagttttacatcccg
tacagacccaaagacttcgaatctgaaagaggactcagtcttgcagcagaaggcagctcg
tttgaacaccaggcctcctcggctgttctggatctgatgggtgatgagaacaacacgctg
gaccagcacaagaagatgatgagatgggatcgcaagagaaaacgcttcgtccgtgacaca
ggaaaagaagacaaaaagagcaaaataaaaacggagagcgggcaagtggtcagtgccaag
aagtcaaagaagaacttttatgaggaatggaagaagaaatacaaggtggacgatgcagat
gattcagatggagagaatggaggaggaaggggaccgaaatttggaggtcgtaggggctac
cgtggagcgggctctcagccccagaacaagaacggctcacgtgttcgttcggagctgaag
agcagcgaacagatcctgaaacagcgtaaacgccagtccaagcagcagttcctgcaaagc
ggtggcttgaagaagctgcgtggccgaaacaagcagcgattaaacgatgtgatgaagtct
ggctttggccgcgggcgcttcaagaaaggcaagatgaggaagagactgtaa
DBGET
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