Pangasianodon hypophthalmus (striped catfish): 113531933
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Entry
113531933 CDS
T05759
Symbol
xrn2
Name
(RefSeq) LOW QUALITY PROTEIN: 5'-3' exoribonuclease 2
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp03008
Ribosome biogenesis in eukaryotes
phyp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
113531933 (xrn2)
09123 Folding, sorting and degradation
03018 RNA degradation
113531933 (xrn2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
phyp03021
]
113531933 (xrn2)
03019 Messenger RNA biogenesis [BR:
phyp03019
]
113531933 (xrn2)
03009 Ribosome biogenesis [BR:
phyp03009
]
113531933 (xrn2)
03016 Transfer RNA biogenesis [BR:
phyp03016
]
113531933 (xrn2)
Transcription machinery [BR:
phyp03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
113531933 (xrn2)
Messenger RNA biogenesis [BR:
phyp03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
113531933 (xrn2)
Ribosome biogenesis [BR:
phyp03009
]
Eukaryotic type
Pre-60S particles
RNases
113531933 (xrn2)
Transfer RNA biogenesis [BR:
phyp03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
113531933 (xrn2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC_4
HTH_73
Motif
Other DBs
NCBI-GeneID:
113531933
NCBI-ProteinID:
XP_026778724
LinkDB
All DBs
Position
Unknown
AA seq
933 aa
AA seq
DB search
MGVPAFFRWLSRKYPSIIVHCVEEKSKECNGVRIPVDTTKPNPNEVEFDNLYLDMNGIIH
PCTHPEDKXXXXXEDEMMVAIFEYIDRLFNIVRPRRVLYMAIDGVAPRAKMNQQRSRRFR
ASKEGVELTEEKKRMREEIFQRGGYLPPEEIKERFDSNCITPGTEFMDNLAKCLRYYIAD
RLSNDPGWRNVTVFLSDASVPGEGEHKIMDFIRRQRAQPNHDPNTHHCLCGADGKXIMLG
LATHEPNFTIIREEFKPNKPRPCSLCGQIGHEIKECQGVAREKKGEHDEFADTVPVSEQE
FIFIRLSVLREYLERELTMASLPFPFNFERSVDDWVFMCFFVGNDFLPHLPSLEIREGAI
DRLVGIYKDVVHRTGGYLTENGYVNLERVELIMQAVGVAEDNIFKKRKEDEENFKRRAKE
KKKRMKVSGIHLFVLKYVTHDAANSIKAMLRNGGKDSAGPSDSMDSHGVKRKAEDSDSEP
EPEDNVRLWEAGWKQRYYKTKFDVDETDDEFRKKVVKAYVEGLCWVLRYYYQGCASWKWY
FPFHYAPFASDFKDIKDMFSEFEKGTKPFKPLEQLMGVFPAASGNFLPPTWRELMSDPDS
PIIDFYPEDFAIDLNGKKYAWQGVALLPFVDERRLRAALEKVYPDLSPDEVRRNSLGSDV
VFVGKSHRLCDFIQELYRSESLESTEIPPELCFGIQGILSLDEDPILPDKPVESPIPMLR
DIPCSSAIGIKFKDPQYEDGYVFKAVTLPGAKFPHKVLKPDDWERSNRQPWRPQLGFNPN
RQQMHLDQSAFRTLGHHTNSHQQGGGQHGHRPPRVAPNMGGLYSNAPPPSIYHQGNYRPP
LRDHQHSRQQGFPRNALPSHPQQYPRPQHSAHGWDRAMQAQVSAYQHNMQRGRGGAGGFQ
QPMQRRDDRRPQEGYNSSRSYGLPPPARRYNWN
NT seq
2802 nt
NT seq
+upstream
nt +downstream
nt
atgggtgtccctgcgtttttccgctggctgagtcggaagtatccgtctataattgtacac
tgcgtggaggagaagtctaaagagtgcaatggagtccgcatacctgttgatacgacaaaa
cccaacccaaacgaggtggagtttgataatctctatttggacatgaatggaatcatccac
ccatgtacacaccctgaagacaagnnnnnnnnnnnnnatgaagatgaaatgatggttgca
atttttgagtacattgaccggctcttcaacatcgttagaccacgaagagttctttacatg
gcaatcgatggtgtcgctcctcgtgccaaaatgaaccagcagcgttccaggcgattcagg
gcctccaaagaaggagtggagctcactgaagaaaaaaagagaatgagggaggaaattttt
cagaggggtggttacctgcctcctgaagaaataaaagagcggtttgacagcaactgcatc
actccgggcacagagttcatggacaacttggccaaatgtttgcgctactacattgcagac
agactgagcaatgatcctggatggcggaatgtcacagtctttctctctgatgccagtgtt
cctggagaaggggaacataagatcatggatttcatcaggaggcagagagctcagcccaat
catgaccctaatacacaccactgtctctgtggtgctgacggtaagtgaattatgttgggt
ctggcaacacatgagcccaacttcaccatcatccgagaggaattcaagcctaacaaaccc
agaccatgttccctgtgtggacagattggacatgaaattaaagagtgccagggtgtggcc
agggagaagaaaggggagcatgatgaatttgctgacacagtgccagtatctgagcaggag
tttatattcattcgattgtccgtactgcgtgagtatctggagcgagagctgaccatggcc
agtctgccttttccctttaactttgagaggagtgttgatgactgggttttcatgtgcttc
tttgtgggaaatgattttctgccccacctgccttctttagaaatcagagagggcgccatt
gaccggcttgtgggtatttacaaagacgttgtgcacaggactgggggatacctcacagaa
aatggttatgtcaacctggagagagtggagctcatcatgcaggctgtgggagttgctgag
gacaacatattcaagaagcgtaaagaggatgaggaaaatttcaaaaggagagccaaggaa
aaaaagaaacgaatgaaggtgagtggaattcatttgttcgttcttaaatacgtcacacat
gatgctgccaattctataaaagccatgttgagaaatgggggaaaggattccgcagggccg
agcgacagcatggacagccacggtgtaaagaggaaagcagaagacagcgacagtgagccg
gagcctgaagataacgtcaggttgtgggaggcaggctggaagcagcggtactacaaaacc
aaatttgacgtggatgagactgatgatgaatttcgtaaaaaggtggtcaaggcttatgtg
gagggcctctgctgggttcttagatactactaccagggctgtgcatcctggaagtggtac
tttccattccactatgcaccgtttgcatccgacttcaaagatatcaaggacatgttctca
gagtttgaaaaagggaccaagccgttcaaaccactagagcagctgatgggagtgtttcct
gctgccagtgggaacttcctgccaccaacatggagggaactgatgtcagaccccgattcg
cccatcattgacttctatcccgaagactttgcgatcgatttgaatggaaagaaatatgcc
tggcagggtgtcgccttgttgccatttgttgatgaacgcaggctgcgggcagccttggaa
aaggtctatcctgatttaagtccagatgaagtcagaaggaatagtctgggcagcgatgtg
gtttttgtggggaaatcccaccgtctgtgtgacttcatccaggaactctatagatcagaa
tctcttgaaagcactgagattcctccagagctgtgctttgggatccaaggtatattatct
cttgatgaagatcctattctaccagataaacctgtagaatctccaatccccatgctgagg
gatattccatgcagcagtgcaattggaattaagttcaaggatccacagtatgaagacggt
tacgtgttcaaggcggtcacccttcctggggcgaagtttccccataaagtgttgaagcct
gatgactgggaaaggtctaacaggcaaccatggagaccccaactgggctttaatcccaac
cgccagcagatgcacctggaccagtctgccttcaggactctgggtcatcatacgaacagt
catcaacaaggaggtggtcagcatggccacaggccccctcgagtcgccccgaacatgggc
gggctgtacagcaatgccccgccccccagtatatatcaccaagggaactatcggccacct
ctccgagaccaccagcattccaggcagcagggatttccgagaaatgcactgccatctcat
ccacagcagtacccacggcctcagcacagtgctcatggatgggatcgtgcaatgcaggct
caagtctctgcatatcagcacaacatgcagagaggtcgtggaggagcaggtggttttcag
cagcccatgcaacgccgagatgatcgccgaccacaggagggttataattcgtcaaggagt
tacggcctgcctccacctgcaaggcgctacaactggaactga
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integrated database retrieval system
