Pangasianodon hypophthalmus (striped catfish): 113532189
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Entry
113532189 CDS
T05759
Symbol
smo
Name
(RefSeq) smoothened homolog
KO
K06226
smoothened
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
113532189 (smo)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04030 G protein-coupled receptors [BR:
phyp04030
]
113532189 (smo)
G protein-coupled receptors [BR:
phyp04030
]
Frizzled / Smoothened family
113532189 (smo)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Frizzled
Fz
Dicty_CAR
Motif
Other DBs
NCBI-GeneID:
113532189
NCBI-ProteinID:
XP_026779214
LinkDB
All DBs
Position
Unknown
AA seq
824 aa
AA seq
DB search
MSSCSIVGGFGMLWLWVGTVMVSQAVMLHKNETMFNDFCKKTTTCEVLKYNTCLGSPLPY
THTSLVLAEDSETQEEAFEKLAMWSGLRNAPRCWAVIQPLLCAVYMPKCENGKVELPSQT
LCQATRRPCSIVEQERGWPNFLKCENTDKFPLGCQNEVQKIKFNTSGQCEAPLVKTDIQA
SWYKDVEGCGIQCDNPLFTEDEHSDMHGYIAIFGSITLLCTFFTLATFLADWKNSNRYPA
VILFYVNACFFVGSIGWLAQFMDGARTEIVCKSDNTMRLGEPSSTETLSCVIIFIIVYYS
LMSGVIWFVMLTYAWHTSFKALGTTHQPLSGKTSYFHLVTWSIPFILTVAILAIAQVDGD
SVSGICFVGYKNYRYRAGFVLAPIGVVLVIGGYFLVRGVMTLFSIKSNHPGLLSEKAASK
INETMLRLGIFGFLAFGFVFITFGCHFYDFFNQAEWERSFREFVLCEANVTIAHQTKKPI
PECTIKNRPSLLVEKINLFSMFGTGIAMSTWVWTKATILIWKRTWCRIIGRSDDEPKRIK
KSKMIAKAFSKRKELQMDPEKELSFSMHTVSHEGPVAGINFELNEPSMEMSSAWAQHVTK
MVARRGAILPQDISVTPTGTPVPPPEERNKLWMVEADISPEMMKRKKKKKKRKKEVRSVA
PAEEDVNPRHREFGPSAVPRLPKLPAHRSLVANLWERQRQQEENVLPGSFPEFRPSCPIP
YQERYGGLGYISSSQRSREPGFNLTNPLTLSQYEGRGQFKQPAWQSNGSNGVFRYSGQEV
PSSVGGGRTGFTTPRSEGRKPAIAPIHSRTNLMEAELMDADSDF
NT seq
2475 nt
NT seq
+upstream
nt +downstream
nt
atgtcctcctgctccattgttggcggatttgggatgctttggctttgggttggcactgtg
atggtgagccaggccgtgatgttacacaaaaatgaaaccatgttcaacgatttttgcaag
aaaaccacaacttgtgaagtgttgaagtacaatacgtgtctcgggtcgcctctgccctac
acgcacacgtccctggtgctggctgaggactccgagacacaagaagaagcttttgagaag
ttggccatgtggtctggtttgagaaatgctcctcggtgctgggcggtcattcagccttta
ctgtgtgctgtttacatgcccaagtgtgagaacggcaaagtggagctgcccagccagacc
ctgtgccaggcgacccgccgaccctgcagcatagtggaacaggagcgagggtggcccaac
ttcctgaagtgtgagaacacggacaagtttcccctgggttgccagaatgaggtgcagaaa
atcaaattcaatacatcaggacaatgtgaagctcctctggtcaaaactgacatccaagcc
agctggtacaaagatgtggagggctgcggcattcagtgcgacaatccactcttcacggag
gacgagcactccgacatgcacggctacatcgccatcttcggatcaatcaccctgctttgc
actttctttacactggcgacgtttcttgccgactggaaaaattccaaccgctacccggct
gtaatcctcttctatgtcaatgcctgcttcttcgtgggcagcatcgggtggctcgctcag
ttcatggatggcgctcgtacagagatcgtgtgcaaaagtgacaacactatgcggcttgga
gagccctcatcgacagagacgctttcgtgtgtaatcattttcatcatcgtgtactactcc
ttgatgtcaggggtcatctggtttgttatgcttacctacgcctggcacacatctttcaaa
gccctgggcactacgcaccaacctctgtctggaaagacgtcctacttccacctggtcaca
tggtccatcccgtttatcctcacagtggctatactggccattgcacaggtcgatggagac
tctgttagtggaatctgctttgttggctacaaaaactacagatatcgcgctgggtttgtt
ctggctccgatcggcgtggtactcgttattggtggctatttccttgttagaggtgtcatg
acattattttccatcaaaagtaaccatccaggactgttgagtgaaaaagcagcaagcaaa
atcaatgagaccatgctgagacttggcatatttggttttctagcttttggttttgttttc
atcacttttggatgccatttctacgacttcttcaaccaggcggagtgggaaaggagcttt
agggaatttgtgctgtgtgaagctaatgtcactatagctcatcagaccaagaaaccgatc
ccagagtgcaccatcaaaaaccggcccagtctgctggtggaaaagatcaatctgttctct
atgttcggtaccggcattgccatgagcacatgggtctggactaaagccactattctcatt
tggaagcgcacctggtgtaggataattggacgcagtgacgatgagccgaagcgcatcaag
aagagcaagatgatagccaaagcattctcgaagcggaaggaactccaaatggacccggaa
aaagaattgtcctttagcatgcacacagtctcccatgagggtcctgtggcgggtattaac
ttcgaactgaatgagccgtccatggaaatgtcctctgcatgggcccagcacgtgacaaag
atggtggcacgaagaggtgccattttacctcaggacatctcggttacgcccactgggacg
cctgtgcctcctccagaagagcgaaacaaactctggatggttgaagccgatatctcccct
gagatgatgaaacgtaagaagaaaaagaagaagaggaagaaggaggtgcgttcagtagcg
cctgctgaagaagacgtgaatccccgtcacagagagttcgggcccagcgctgtccctcgc
ctccccaagctcccggcacatcgcagcctcgtggctaacctctgggagcggcaacggcag
caagaggagaatgtccttccaggctccttcccggaattccgaccttcctgtcccattccg
taccaggagagatatggagggcttggctatatttcatccagccagcgcagcagggagcct
ggctttaacctcaccaacccactgacgctaagccagtacgagggacgaggccagtttaaa
caaccggcctggcagtctaatggatctaatggagtgttccgctattcagggcaggaggtg
ccttcgtcagtgggtggtggcaggacaggctttacaacacctcgatcagagggcaggaaa
ccagcgatcgcgccaatccactccagaaccaacctaatggaggcggaactgatggatgct
gactctgatttttga
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